Factsheet for PGSC0003DMT400038585

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

extracellular: 25270759

msms PMID: 25270759 doi

DD Burra, O Berkowitz, PE Hedley, J Morris, S Resjö, F Levander, E Liljeroth, E Andreasson, E Alexandersson

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085380.2.1	Tomato	cytosol, peroxisome, plasma membrane	92.91	91.88
PGSC0003DMT400016307	Potato	golgi, peroxisome, plasma membrane	76.49	76.21
CDY36483	Canola	plasma membrane	69.03	71.43
CDY29235	Canola	peroxisome, plasma membrane, vacuole	68.66	71.04
VIT_18s0001g12380.t01	Wine grape	peroxisome	69.78	70.83
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	64.93	67.97
AT2G18460.1	Thale cress	plasma membrane	67.16	65.69
KRH15223	Soybean	plastid	60.82	62.93
GSMUA_Achr1P27070_001	Banana	golgi, peroxisome, plasma membrane	64.18	61.65
Zm00001d023653_P001	Maize	golgi, peroxisome, vacuole	59.7	57.55
EES15972	Sorghum	golgi, peroxisome, vacuole	59.33	56.99
PGSC0003DMT400050735	Potato	plasma membrane	50.37	53.15
Os12t0482600-01	Rice	endoplasmic reticulum, mitochondrion, plastid	35.07	52.81
PGSC0003DMT400016276	Potato	endoplasmic reticulum, nucleus, plasma membrane	52.61	42.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400038585	EnsemblPlantsGene:PGSC0003DMG400014905	EntrezGene:102600634	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF6	PFAM:PF04367	PGSC:PGSC0003DMG400014905	RefSeq:XP_006340598.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002969FCE	UniProt:M1B750	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014905]

Coordinates

chr2:-:40654735..40656887

Molecular Weight (calculated)

29853.5 Da

IEP (calculated)

9.552

GRAVY (calculated)

0.297

Length

268 amino acids

Sequence
(BLAST)

001: MATPRADREL ELLIPMGVIE NINANHSKSS SPSHSPKIPS SHHSSGKEAF SKVIRSWTWK KFISGCVILF PIAITFYITW WFIHFVDAFF SPIYNHLGIN
101: VFGLGFATSM TFIFFVGVFM SSWLGASLLS LGEWFIKKMP LMSYIYSASK QISSAISPDK TSHAFKEVAI IRHPRLGEYA FGFITSTVIL HKNTGAEELC
201: CVYVPTNHLY LGDIFLVNSK DVMRPNLSVR EGIEIVISGG MAVPKVLNIQ EVQSISSPRV GKFAVPQV

Best Arabidopsis Sequence Match ( AT2G18460.1 )
(BLAST)

001: METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG
101: FVTSITFIFM VGVFMSSWLG ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT STVILRGRAG GEELCCVYVP
201: TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT

Arabidopsis Description

LCV3Protein LIKE COV 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IQJ6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.