Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05723 | Canola | plasma membrane | 85.16 | 83.21 |
| Bra041043.1-P | Field mustard | plasma membrane | 85.55 | 82.64 |
| CDY31990 | Canola | plasma membrane | 85.55 | 82.64 |
| AT2G20120.1 | Thale cress | plasma membrane | 84.77 | 80.97 |
| Solyc12g007130.1.1 | Tomato | plasma membrane | 78.91 | 78.91 |
| PGSC0003DMT400000833 | Potato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 77.34 | 77.34 |
| GSMUA_Achr6P22910_001 | Banana | plasma membrane | 76.95 | 76.65 |
| VIT_11s0016g03780.t01 | Wine grape | plasma membrane | 77.73 | 74.81 |
| KRH39309 | Soybean | cytosol, peroxisome, plasma membrane | 75.78 | 73.21 |
| KRH48364 | Soybean | cytosol, peroxisome, plasma membrane | 75.78 | 73.21 |
| GSMUA_Achr10P... | Banana | plasma membrane | 75.0 | 70.59 |
| GSMUA_Achr8P27800_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 74.61 | 69.71 |
| GSMUA_Achr3P15700_001 | Banana | cytosol, peroxisome, plasma membrane | 73.83 | 68.73 |
| Os05t0529000-01 | Rice | cytosol, peroxisome, plasma membrane | 71.09 | 66.67 |
| Zm00001d038756_P001 | Maize | cytosol, peroxisome, plasma membrane | 70.31 | 65.93 |
| EES19854 | Sorghum | cytosol, peroxisome, plasma membrane | 69.92 | 65.57 |
| Zm00001d010806_P001 | Maize | cytosol, peroxisome, plasma membrane | 69.53 | 65.2 |
| TraesCS1B01G363400.1 | Wheat | golgi, peroxisome, vacuole | 69.14 | 64.84 |
| Zm00001d016021_P001 | Maize | plasma membrane | 67.97 | 62.59 |
| AT2G18460.1 | Thale cress | plasma membrane | 66.8 | 62.41 |
| TraesCS1A01G348700.1 | Wheat | golgi, peroxisome, plasma membrane | 68.36 | 61.19 |
| Os02t0269000-01 | Rice | plasma membrane | 69.53 | 61.17 |
| TraesCS1D01G351700.1 | Wheat | golgi, peroxisome, plasma membrane | 67.97 | 60.84 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 57.03 | 55.94 |
| HORVU1Hr1G081700.1 | Barley | mitochondrion | 68.75 | 52.38 |
| OQU84787 | Sorghum | nucleus, peroxisome, plasma membrane | 66.8 | 47.37 |
| Zm00001d007647_P001 | Maize | mitochondrion | 19.53 | 34.72 |
| Zm00001d025321_P001 | Maize | mitochondrion | 19.53 | 34.72 |
Protein Annotations
| MapMan:35.1 | EntrezGene:816532 | ProteinID:AAD24400.2 | ProteinID:AEC06969.1 | ArrayExpress:AT2G20130 | EnsemblPlantsGene:AT2G20130 |
| RefSeq:AT2G20130 | TAIR:AT2G20130 | RefSeq:AT2G20130-TAIR-G | EnsemblPlants:AT2G20130.1 | TAIR:AT2G20130.1 | EMBL:AY072447 |
| EMBL:AY084942 | EMBL:AY128911 | InterPro:DUF502 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0010222 | GO:GO:0016020 |
| GO:GO:0016021 | Symbol:LCV1 | RefSeq:NP_565465.1 | PFAM:PF04367 | PO:PO:0000293 | PO:PO:0009005 |
| PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025195 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF1 |
| UniProt:Q8VY49 | TMHMM:TMhelix | UniParc:UPI000009DCF9 | SEG:seg | : | : |
Description
LCV1Protein LIKE COV 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY49]
Coordinates
chr2:-:8690293..8692490
Molecular Weight (calculated)
28380.2 Da
IEP (calculated)
6.236
GRAVY (calculated)
0.247
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRERDREL LIPVADFGDK DDGSSSKPSS SSSASSSHQS GHETLSLFIR GWASKKFMTG CVILLPIAVT FYTTWWFIHF VDGFFSPIYA LLGINIFGFG
101: FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT EEELCCVYVP
201: TNHLYIGDIL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTLDKPLA SIGNES
101: FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT EEELCCVYVP
201: TNHLYIGDIL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTLDKPLA SIGNES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.