Factsheet for TraesCS1A01G348700.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	golgi, peroxisome, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1A01G281600.1
TraesCS1A01G348700.1
TraesCS1B01G143000.1
TraesCS1B01G290700.1
TraesCS1B01G363400.1
TraesCS1D01G130300.1
TraesCS1D01G280800.1
TraesCS1D01G351700.1
TraesCS3A01G104300.1
TraesCS3A01G172900.1
TraesCS3A01G193800.1
TraesCS3A01G363600.1
TraesCS3B01G122600.1
TraesCS3B01G203800.1
TraesCS3B01G221700.1
TraesCS3B01G395800.1
TraesCS3D01G106500.1
TraesCS3D01G179300.1
TraesCS3D01G196200.1
TraesCS3D01G357100.1
TraesCS5A01G089200.1
TraesCS5B01G095200.1
TraesCS5D01G101300.1
TraesCS7B01G236300.1
TraesCS7D01G332100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	TraesCS1A01G348700.1	AT2G20130.1	21798944
AT2G20130.1	TraesCS1B01G363400.1	AT2G20130.1	21798944
AT2G20130.1	TraesCS1D01G351700.1	AT2G20130.1	21798944
AT2G20130.1	TraesCS1A01G124100.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS1B01G143000.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS1D01G130300.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS3A01G104300.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS3B01G122600.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS3D01G106500.1	AT3G13710.1	21798944
AT2G20130.1	TraesCS3A01G172900.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS3A01G193800.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS3B01G203800.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS3B01G221700.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS3D01G179300.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS3D01G196200.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS5A01G089200.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS5B01G095200.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS5D01G101300.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS7B01G236300.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS7D01G332100.1	AT4G02080.1	21798944
AT2G20130.1	TraesCS1A01G281600.1	AT5G02040.1	21798944
AT2G20130.1	TraesCS1B01G290700.1	AT5G02040.1	21798944
AT2G20130.1	TraesCS1D01G280800.1	AT5G02040.1	21798944
AT2G20130.1	TraesCS3A01G363600.1	AT5G02040.1	21798944
AT2G20130.1	TraesCS3B01G395800.1	AT5G02040.1	21798944
AT2G20130.1	TraesCS3D01G357100.1	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	99.3	99.3
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	92.66	97.07
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	81.47	85.35
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	81.47	85.35
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	80.77	84.62
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	78.32	82.05
HORVU1Hr1G081700.1	Barley	mitochondrion	96.15	81.85
VIT_11s0016g03780.t01	Wine grape	plasma membrane	69.58	74.81
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	66.78	74.61
Solyc12g007130.1.1	Tomato	plasma membrane	66.43	74.22
GSMUA_Achr6P22910_001	Banana	plasma membrane	66.43	73.93
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	67.48	72.83
CDY50615	Canola	plasma membrane	65.73	72.59
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	67.13	72.45
CDY69713	Canola	plasma membrane	66.08	72.41
Bra015065.1-P	Field mustard	plasma membrane	66.43	72.24
CDY46483	Canola	plasma membrane	65.73	71.76
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	68.88	71.64
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	67.83	70.8
CDX93027	Canola	plasma membrane	65.73	70.15
Bra013250.1-P	Field mustard	plasma membrane	65.73	70.15
AT2G20130.1	Thale cress	plasma membrane	61.19	68.36
AT2G20120.1	Thale cress	plasma membrane	63.64	67.91
CDY05723	Canola	plasma membrane	61.54	67.18
CDY31990	Canola	plasma membrane	62.24	67.17
Bra041043.1-P	Field mustard	plasma membrane	62.24	67.17
TraesCS3A01G379800.1	Wheat	endoplasmic reticulum, peroxisome, plastid, vacuole	51.05	56.37
TraesCS1A01G272400.1	Wheat	cytosol, plasma membrane, plastid, vacuole	50.35	55.38

Protein Annotations

EnsemblPlants:TraesCS1A01G348700.1	EnsemblPlantsGene:TraesCS1A01G348700	InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	PFAM:PF04367
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1A:-:534043600..534046893

Molecular Weight (calculated)

31230.6 Da

IEP (calculated)

8.247

GRAVY (calculated)

0.128

Length

286 amino acids

Sequence
(BLAST)

001: MMGDDKAPRS LSPMGGRDRD RELLIPVSGG GGGGSVPRAG GDDDDLDRTA ASPSASAALS STGREAFHKV VRSWASKKFM TGCVILFPIA ITFYFTWWFI
101: HFVDGFFSPI YAQLGINIFG LGFITSVTFI FFVGVFMSSW VGASVLGIGE WIIKRMPLVR HIYNASKQIS AAISPDQNKQ AFKEAVIIRH PRIGEYAFGF
201: ITSSVSLQSY SGQEDLYCVY VPTNHLYIGD IFMVNSKDVI RPNLSVREGI EIVVSGGMSM PQVLSTLDPH PHLHAIHTDR GGASRS

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.