Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400000833 | Potato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 96.48 | 96.48 |
| KRH48364 | Soybean | cytosol, peroxisome, plasma membrane | 84.38 | 81.51 |
| KRH39309 | Soybean | cytosol, peroxisome, plasma membrane | 83.59 | 80.75 |
| VIT_11s0016g03780.t01 | Wine grape | plasma membrane | 82.03 | 78.95 |
| AT2G20130.1 | Thale cress | plasma membrane | 78.91 | 78.91 |
| GSMUA_Achr6P22910_001 | Banana | plasma membrane | 77.73 | 77.43 |
| GSMUA_Achr10P... | Banana | plasma membrane | 80.08 | 75.37 |
| CDY50615 | Canola | plasma membrane | 76.17 | 75.29 |
| CDY05723 | Canola | plasma membrane | 75.78 | 74.05 |
| CDY31990 | Canola | plasma membrane | 76.56 | 73.96 |
| Bra041043.1-P | Field mustard | plasma membrane | 76.56 | 73.96 |
| CDX93027 | Canola | plasma membrane | 77.34 | 73.88 |
| Bra013250.1-P | Field mustard | plasma membrane | 77.34 | 73.88 |
| AT2G20120.1 | Thale cress | plasma membrane | 76.95 | 73.51 |
| CDY69713 | Canola | plasma membrane | 74.61 | 73.18 |
| CDY46483 | Canola | plasma membrane | 74.61 | 72.9 |
| Bra015065.1-P | Field mustard | plasma membrane | 74.61 | 72.62 |
| Os05t0529000-01 | Rice | cytosol, peroxisome, plasma membrane | 76.95 | 72.16 |
| GSMUA_Achr3P15700_001 | Banana | cytosol, peroxisome, plasma membrane | 76.95 | 71.64 |
| Zm00001d038756_P001 | Maize | cytosol, peroxisome, plasma membrane | 76.17 | 71.43 |
| Zm00001d010806_P001 | Maize | cytosol, peroxisome, plasma membrane | 75.78 | 71.06 |
| EES19854 | Sorghum | cytosol, peroxisome, plasma membrane | 75.78 | 71.06 |
| TraesCS1B01G363400.1 | Wheat | golgi, peroxisome, vacuole | 75.39 | 70.7 |
| GSMUA_Achr8P27800_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 75.39 | 70.44 |
| TraesCS1A01G348700.1 | Wheat | golgi, peroxisome, plasma membrane | 74.22 | 66.43 |
| TraesCS1D01G351700.1 | Wheat | golgi, peroxisome, plasma membrane | 74.22 | 66.43 |
| Solyc04g071710.2.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 64.84 | 64.09 |
| Zm00001d016021_P001 | Maize | plasma membrane | 69.14 | 63.67 |
| Os02t0269000-01 | Rice | plasma membrane | 72.27 | 63.57 |
| Solyc02g085380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 66.8 | 63.1 |
| Solyc04g051340.2.1 | Tomato | plasma membrane | 62.11 | 62.6 |
| Solyc04g071760.2.1 | Tomato | golgi, peroxisome, vacuole | 64.06 | 61.65 |
| HORVU1Hr1G081700.1 | Barley | mitochondrion | 75.78 | 57.74 |
| OQU84787 | Sorghum | nucleus, peroxisome, plasma membrane | 68.75 | 48.75 |
| Zm00001d007647_P001 | Maize | mitochondrion | 20.31 | 36.11 |
| Zm00001d025321_P001 | Maize | mitochondrion | 20.31 | 36.11 |
Protein Annotations
| EnsemblPlants:Solyc12g007130.1.1 | EnsemblPlantsGene:Solyc12g007130.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0010222 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF1 | PFAM:PF04367 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000276AAEE | UniProt:K4DBQ0 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr12:-:1570078..1576401
Molecular Weight (calculated)
28339.0 Da
IEP (calculated)
7.195
GRAVY (calculated)
0.186
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSNRDREL LIPVANTGAG DDGAGDKPSS SSSSSSSHHH SGRETFSKVV RSWASKKFMT GCVILFPIAV TFYITWWFIH FVDGFFSPIY AQLGIDVFGL
101: GFMTSITFIF LVGVFMSSWL GTSVLGLGEW FIKRMPFVRH IYNASKQISS AISPDQNTQA FKEVAIIRHP RIGEYAFGFI TSSVVLQNYS GDEELCCVYV
201: PTNHLYIGDI FLVNARDVIR PNLSVREGIE IVVSGGMSMP QILSTLDPGS IQVDRR
101: GFMTSITFIF LVGVFMSSWL GTSVLGLGEW FIKRMPFVRH IYNASKQISS AISPDQNTQA FKEVAIIRHP RIGEYAFGFI TSSVVLQNYS GDEELCCVYV
201: PTNHLYIGDI FLVNARDVIR PNLSVREGIE IVVSGGMSMP QILSTLDPGS IQVDRR
001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
Arabidopsis Description
COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.