Factsheet for GSMUA_Achr10P14820_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P15700_001
GSMUA_Achr6P22910_001
GSMUA_Achr7P09070_001
GSMUA_Achr8P02510_001
GSMUA_Achr8P27800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	GSMUA_Achr10P...	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr3P15700_001	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr6P22910_001	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr8P27800_001	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944
AT2G20130.1	GSMUA_Achr11P...	AT4G02080.1	21798944
AT2G20130.1	GSMUA_Achr8P02510_001	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g007130.1.1	Tomato	plasma membrane	75.37	80.08
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	75.0	79.69
GSMUA_Achr6P22910_001	Banana	plasma membrane	73.53	77.82
VIT_11s0016g03780.t01	Wine grape	plasma membrane	74.63	76.32
AT2G20130.1	Thale cress	plasma membrane	70.59	75.0
CDY50615	Canola	plasma membrane	71.32	74.9
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	75.0	74.45
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	72.43	74.34
CDY69713	Canola	plasma membrane	71.32	74.33
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	72.06	73.96
Bra015065.1-P	Field mustard	plasma membrane	71.32	73.76
CDY46483	Canola	plasma membrane	70.96	73.66
Bra013250.1-P	Field mustard	plasma membrane	72.06	73.13
CDX93027	Canola	plasma membrane	72.06	73.13
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	72.43	71.64
CDY05723	Canola	plasma membrane	68.75	71.37
Bra041043.1-P	Field mustard	plasma membrane	69.49	71.32
CDY31990	Canola	plasma membrane	69.49	71.32
AT2G20120.1	Thale cress	plasma membrane	69.49	70.52
Os02t0269000-01	Rice	plasma membrane	70.96	66.32
Zm00001d016021_P001	Maize	plasma membrane	67.65	66.19
GSMUA_Achr6P19630_001	Banana	plasma membrane	58.46	62.85
GSMUA_Achr1P27070_001	Banana	golgi, peroxisome, plasma membrane	63.97	62.37
GSMUA_Achr5P01100_001	Banana	plasma membrane	58.09	61.96
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	68.01	51.25
Zm00001d007647_P001	Maize	mitochondrion	21.32	40.28
Zm00001d025321_P001	Maize	mitochondrion	20.96	39.58

Protein Annotations

EnsemblPlants:GSMUA_Achr10P14820_001	EnsemblPlants:GSMUA_Achr10T14820_001	EnsemblPlantsGene:GSMUA_Achr10G14820_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	PFAM:PF04367	SEG:seg	TMHMM:TMhelix
UniParc:UPI000296CED7	UniProt:M0RIA8	MapMan:35.1	:	:	:

Description

protein of unknown function DUF502 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G14820_001]

Coordinates

chr10:-:22946591..22951959

Molecular Weight (calculated)

30431.8 Da

IEP (calculated)

6.631

GRAVY (calculated)

0.160

Length

272 amino acids

Sequence
(BLAST)

001: MMMGEDKSSP SSIGMGSRER DRELLIPVGE DPADDGDSKT SAAAATASPS RHHSGREAFH KVVRSWASKK FMTGCVILFP IAITFYITWW FIRFVDGFFS
101: PIYAQLGIGI FGLGFITSIT FIFLVGVFMS SWLGTSVLSL GEWFIKRMPF VRHIYNASKQ ISTAISPDQN TQAFKEVVII RHPRIGEYAF GFITSTVVLQ
201: NYTGEEELFC VYVPTNHLYI GDVFMINSRD VIRPNLSVRE GIEIVVSGGM SMPQILSTLE SHSIQLDRTE FP

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.