Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- vacuole 2
- extracellular 1
- endoplasmic reticulum 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77594 | Sorghum | plastid | 94.68 | 90.82 |
| TraesCS1D01G130300.1 | Wheat | plastid | 75.0 | 73.82 |
| TraesCS1A01G124100.1 | Wheat | plastid | 73.94 | 72.77 |
| TraesCS1B01G143000.1 | Wheat | plastid | 73.94 | 72.4 |
| Os05t0200280-01 | Rice | plasma membrane | 72.87 | 70.98 |
| HORVU1Hr1G028520.1 | Barley | plastid | 74.47 | 64.81 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 64.36 | 62.69 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 55.85 | 55.85 |
| KRH23330 | Soybean | plastid | 47.34 | 48.37 |
| KRH10001 | Soybean | mitochondrion | 46.81 | 47.83 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 44.68 | 46.15 |
| Solyc03g121460.1.1 | Tomato | plastid | 43.62 | 45.05 |
| KRH47141 | Soybean | plasma membrane | 42.55 | 44.94 |
| KRH44167 | Soybean | plasma membrane | 42.02 | 44.89 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 45.74 | 44.56 |
| Bra014355.1-P | Field mustard | cytosol, plasma membrane, plastid | 43.09 | 42.86 |
| CDY08228 | Canola | plasma membrane | 43.09 | 42.86 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 43.09 | 42.86 |
| AT1G55190.1 | Thale cress | plasma membrane | 42.02 | 41.8 |
| VIT_11s0016g02330.t01 | Wine grape | plastid | 42.02 | 41.8 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 40.96 | 41.18 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 39.89 | 40.11 |
| CDY23634 | Canola | plasma membrane | 38.3 | 39.78 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 39.36 | 39.36 |
| Bra037983.1-P | Field mustard | extracellular, plasma membrane | 29.26 | 39.29 |
| CDX97509 | Canola | plasma membrane | 37.77 | 39.23 |
| AT3G13710.1 | Thale cress | plasma membrane | 38.3 | 38.3 |
| Bra027406.1-P | Field mustard | plasma membrane | 36.17 | 37.57 |
| AT1G17700.1 | Thale cress | plasma membrane | 35.11 | 36.67 |
| CDX81845 | Canola | plasma membrane | 35.11 | 36.46 |
| CDY51735 | Canola | plasma membrane | 35.11 | 36.26 |
| Bra031001.1-P | Field mustard | plasma membrane | 34.57 | 35.91 |
| CDY26225 | Canola | plasma membrane | 35.11 | 35.87 |
| Bra021504.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 34.57 | 35.71 |
| Bra025954.1-P | Field mustard | plasma membrane | 34.57 | 35.33 |
| CDY37483 | Canola | plasma membrane | 34.04 | 35.16 |
| KRH49060 | Soybean | plasma membrane | 36.17 | 34.34 |
| CDY06788 | Canola | plastid | 35.11 | 34.02 |
| KRH74153 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 36.17 | 34.0 |
| Zm00001d034469_P001 | Maize | plastid | 40.96 | 33.92 |
| Bra011125.1-P | Field mustard | mitochondrion | 30.85 | 33.14 |
| CDY43514 | Canola | mitochondrion | 30.85 | 33.14 |
| Zm00001d013069_P001 | Maize | plastid | 39.36 | 32.74 |
| AT4G29658.2 | Thale cress | plastid | 32.98 | 32.63 |
| CDY59501 | Canola | plasma membrane | 31.91 | 32.61 |
| Zm00001d010603_P002 | Maize | mitochondrion | 34.57 | 29.95 |
| Zm00001d043018_P001 | Maize | mitochondrion | 31.38 | 26.82 |
| Zm00001d052322_P001 | Maize | plastid | 25.53 | 25.4 |
| Zm00001d013306_P001 | Maize | plastid | 35.64 | 24.54 |
| Zm00001d033966_P001 | Maize | plastid | 35.11 | 22.6 |
| CDY37482 | Canola | plastid | 23.4 | 21.05 |
| Bra021503.1-P | Field mustard | plastid | 22.87 | 20.67 |
| CDY51734 | Canola | plastid | 22.87 | 20.57 |
| Bra021502.1-P | Field mustard | plastid | 21.81 | 19.16 |
| CDY51733 | Canola | plastid | 21.81 | 19.16 |
| CDY55133 | Canola | plasma membrane | 21.28 | 18.78 |
Protein Annotations
| EnsemblPlants:Zm00001d037747_P001 | EnsemblPlants:Zm00001d037747_T001 | EnsemblPlantsGene:Zm00001d037747 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF10 | PFAM:PF03208 | ProteinID:AQK84722.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000221658E | UniProt:A0A1D6M083 | MapMan:22.8.4.3.2 | : | : |
Description
Prenylated rab acceptor family protein
Coordinates
chr6:+:136217687..136218253
Molecular Weight (calculated)
20397.0 Da
IEP (calculated)
9.784
GRAVY (calculated)
0.505
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKYGTIPTT SSTPAPEGSS QLDFISRAKA RGASALATRR PWRELADPRA LSVPRGFSDA YRRARANLAH FAANYALVVL LVVFVSLLWR PVSMLVFLAC
101: FAAWLVLYFL RDRDVDGTLV ICGRGVGDGV VVAVTLVLLL LTGATGFILT SLLVGLLLVL LHALLHRPAD SIDDEAGRWY TPVPPSNY
101: FAAWLVLYFL RDRDVDGTLV ICGRGVGDGV VVAVTLVLLL LTGATGFILT SLLVGLLLVL LHALLHRPAD SIDDEAGRWY TPVPPSNY
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.