Factsheet for Zm00001d040953_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d037747_P001
Zm00001d039455_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	Zm00001d037747_P001	AT3G13720.1	21798944
AT5G10730.1	Zm00001d039455_P002	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88572	Soybean	cytosol, extracellular	27.75	44.54
KRG88574	Soybean	cytosol	18.85	44.44
GSMUA_Achr1P19070_001	Banana	plastid	63.87	42.81
AT5G10730.1	Thale cress	mitochondrion	61.26	40.77
Bra009010.1-P	Field mustard	mitochondrion	61.26	40.62
Bra028572.1-P	Field mustard	mitochondrion	61.26	40.48
CDX97051	Canola	cytosol, extracellular, plastid	21.99	39.62
KRH61625	Soybean	mitochondrion	59.16	39.37
Solyc08g006510.2.1	Tomato	plastid, unclear	56.54	38.3
EES00762	Sorghum	mitochondrion, plastid	77.49	36.36
VIT_04s0008g07400.t01	Wine grape	cytosol	54.97	35.47
KRG88575	Soybean	mitochondrion	16.75	34.78
KRH52291	Soybean	mitochondrion	37.17	27.52
KRH52293	Soybean	cytosol	18.85	27.27
Zm00001d000123_P003	Maize	plastid	32.46	20.26
Zm00001d040954_P001	Maize	cytosol	4.19	7.14
KRG88578	Soybean	cytosol	1.57	2.83
KRG88571	Soybean	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d040953_P001	EnsemblPlants:Zm00001d040953_T001	EnsemblPlantsGene:Zm00001d040953	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR12126	PANTHER:PTHR12126:SF8	PFAM:PF13460	ProteinID:ONM32220.1	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0008439AE8	UniProt:A0A1D6MTK5	MapMan:35.1	:	:	:

Description

NAD(P)-binding Rossmann-fold superfamily protein

Coordinates

chr3:+:82375568..82389198

Molecular Weight (calculated)

20694.7 Da

IEP (calculated)

9.272

GRAVY (calculated)

-0.085

Length

191 amino acids

Sequence
(BLAST)

001: MLTLYNSLVY WRADNSSSIL LKSGNAFFGN ATPSDQRHIE KPFKVKEAEP VNVTKPSPHK LLVLGGSGFV GSHVCKEALD KGLVVSSLNR SGKPSLNEPW
101: ADKVIWNQGN LLEPASLKDA MDNVSAVVSC VGGFGSNSFM YKINGTANIN AIRAAAEKGV KRFVYVSAAD FGLVNYLLQG YYEGKVTLLD Y

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.