Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d037747_P001 | |
| Zm00001d039455_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10730.1 | Zm00001d037747_P001 | AT3G13720.1 | 21798944 |
| AT5G10730.1 | Zm00001d039455_P002 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG88578 | Soybean | cytosol | 58.04 | 61.32 |
| KRG88571 | Soybean | extracellular | 28.57 | 58.18 |
| KRH52293 | Soybean | cytosol | 46.43 | 39.39 |
| HORVU5Hr1G073450.4 | Barley | mitochondrion | 80.36 | 30.61 |
| TraesCS5A01G165800.1 | Wheat | golgi | 80.36 | 30.61 |
| Os02t0556100-01 | Rice | mitochondrion | 79.46 | 30.48 |
| TraesCS5B01G162400.1 | Wheat | mitochondrion | 79.46 | 30.27 |
| KRG88574 | Soybean | cytosol | 21.43 | 29.63 |
| GSMUA_Achr1P19070_001 | Banana | plastid | 67.86 | 26.67 |
| AT5G10730.1 | Thale cress | mitochondrion | 66.96 | 26.13 |
| Bra009010.1-P | Field mustard | mitochondrion | 66.07 | 25.69 |
| Bra028572.1-P | Field mustard | mitochondrion | 65.18 | 25.26 |
| KRH61625 | Soybean | mitochondrion | 63.39 | 24.74 |
| Solyc08g006510.2.1 | Tomato | plastid, unclear | 60.71 | 24.11 |
| VIT_04s0008g07400.t01 | Wine grape | cytosol | 61.61 | 23.31 |
| KRH52291 | Soybean | mitochondrion | 48.21 | 20.93 |
| KRG88572 | Soybean | cytosol, extracellular | 18.75 | 17.65 |
| Zm00001d000123_P003 | Maize | plastid | 35.71 | 13.07 |
| KRG88575 | Soybean | mitochondrion | 4.46 | 5.43 |
| Zm00001d040953_P001 | Maize | mitochondrion, plastid | 7.14 | 4.19 |
Protein Annotations
| EnsemblPlants:Zm00001d040954_P001 | EnsemblPlants:Zm00001d040954_T001 | EnsemblPlantsGene:Zm00001d040954 | PANTHER:PTHR12126 | PANTHER:PTHR12126:SF8 | ProteinID:ONM32221.1 |
| SEG:seg | UniParc:UPI000843276C | UniProt:A0A1D6MTK6 | MapMan:35.2 | : | : |
Description
NAD(P)-binding Rossmann-fold superfamily protein
Coordinates
chr3:+:82416424..82429112
Molecular Weight (calculated)
11535.4 Da
IEP (calculated)
11.414
GRAVY (calculated)
0.267
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGRVGREAG VVGGAPTAGE RAAGGVILRP GFIHGTRRVG SVKIPLGLVG SPMQMVLQNI KPLTRLPLIG PLLTPPVSAA SVGKVAVRAA TDPVFPPGIV
101: DVYGIMRYSE QN
101: DVYGIMRYSE QN
001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR
Arabidopsis Description
AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.