CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	KRH10001	AT3G13720.1	21798944
AT5G10730.1	KRH23330	AT3G13720.1	21798944
AT5G10730.1	KRH44167	AT3G13720.1	21798944
AT5G10730.1	KRH47141	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88578	Soybean	cytosol	34.49	93.4
KRG88574	Soybean	cytosol	23.34	82.72
AT5G10730.1	Thale cress	mitochondrion	79.79	79.79
CDY40113	Canola	mitochondrion	79.09	78.55
KRH52293	Soybean	cytosol	35.89	78.03
CDY67689	Canola	mitochondrion	78.75	77.93
Bra028572.1-P	Field mustard	mitochondrion	78.4	77.85
Solyc08g006510.2.1	Tomato	plastid, unclear	76.31	77.66
CDX97050	Canola	mitochondrion	77.7	77.43
Bra009010.1-P	Field mustard	mitochondrion	77.35	77.08
CDX69807	Canola	mitochondrion	77.35	77.08
KRG88571	Soybean	extracellular	14.63	76.36
GSMUA_Achr1P19070_001	Banana	plastid	74.56	75.09
KRG88575	Soybean	mitochondrion	24.04	75.0
KRG88572	Soybean	cytosol, extracellular	31.01	74.79
VIT_04s0008g07400.t01	Wine grape	cytosol	75.96	73.65
KRH52291	Soybean	mitochondrion	60.28	67.05
Os02t0556100-01	Rice	mitochondrion	66.55	65.41
HORVU5Hr1G073450.4	Barley	mitochondrion	65.51	63.95
TraesCS5A01G165800.1	Wheat	golgi	65.16	63.61
Zm00001d040954_P001	Maize	cytosol	24.74	63.39
TraesCS5B01G162400.1	Wheat	mitochondrion	64.81	63.27
Zm00001d040953_P001	Maize	mitochondrion, plastid	39.37	59.16
EES00762	Sorghum	mitochondrion, plastid	62.72	44.23
KRH74352	Soybean	plastid	35.19	33.33
KRH39581	Soybean	mitochondrion, plastid	34.84	33.0

Protein Annotations

EntrezGene:100791278	Gene3D:3.40.50.720	MapMan:35.1	EMBL:ACUP02002178	EnsemblPlantsGene:GLYMA_04G058600	GO:GO:0003674
GO:GO:0003824	GO:GO:0003954	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055114	GO:GO:1901006	UniProt:I1JU43
EnsemblPlants:KRH61625	ProteinID:KRH61625	ProteinID:KRH61625.1	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460
PANTHER:PTHR12126	PANTHER:PTHR12126:SF8	SUPFAM:SSF51735	UniParc:UPI0002339636	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:4805672..4812273

Molecular Weight (calculated)

30726.1 Da

IEP (calculated)

9.847

GRAVY (calculated)

0.068

Length

287 amino acids

Sequence
(BLAST)

001: MRTVISRLIH STPSISRLNA TVVSISGRNL CTDSNKVDGP FKVEEAETVN VPPLPTEKLL VLGGNGFVGS HICREALDRD LSVASLSRSG RSSLHDSWAT
101: NVAWYKGNLL STDSLKEALN GVTAVISCVG GFGSNSYMYK INGTANINAI RAASDQGVKR FVYISAADFG VVNYLLRGYY EGKRASETEL LTRFPYGGVI
201: LRPGFIYGTR SVGSMKIPLG VIGSPLEMVL QVAKPLNQIP LVGPLLTPPV NVTAVAKVAV RAATDPVFPP GIIDAYGIQR YSQHKSN

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.