Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 7
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
19010998
mitochondrion: 23027867 plastid: 27992503 plasma membrane: 28056797 |
msms PMID:
23027867
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID:
19010998
doi
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0196500-01 | |
| Os05t0200280-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10730.1 | Os01t0196500-01 | AT3G13720.1 | 21798944 |
| AT5G10730.1 | Os05t0200280-01 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G165800.1 | Wheat | golgi | 82.53 | 81.97 |
| TraesCS5B01G162400.1 | Wheat | mitochondrion | 82.19 | 81.63 |
| HORVU5Hr1G073450.4 | Barley | mitochondrion | 81.85 | 81.29 |
| Zm00001d040954_P001 | Maize | cytosol | 30.48 | 79.46 |
| GSMUA_Achr1P19070_001 | Banana | plastid | 70.89 | 72.63 |
| KRG88578 | Soybean | cytosol | 25.68 | 70.75 |
| KRG88574 | Soybean | cytosol | 19.18 | 69.14 |
| AT5G10730.1 | Thale cress | mitochondrion | 67.47 | 68.64 |
| Bra028572.1-P | Field mustard | mitochondrion | 67.12 | 67.82 |
| Bra009010.1-P | Field mustard | mitochondrion | 66.44 | 67.36 |
| KRH61625 | Soybean | mitochondrion | 65.41 | 66.55 |
| Solyc08g006510.2.1 | Tomato | plastid, unclear | 63.7 | 65.96 |
| KRH52293 | Soybean | cytosol | 29.79 | 65.91 |
| KRG88571 | Soybean | extracellular | 11.99 | 63.64 |
| VIT_04s0008g07400.t01 | Wine grape | cytosol | 62.67 | 61.82 |
| KRG88572 | Soybean | cytosol, extracellular | 23.29 | 57.14 |
| EES00762 | Sorghum | mitochondrion, plastid | 77.05 | 55.28 |
| KRH52291 | Soybean | mitochondrion | 43.84 | 49.61 |
| KRG88575 | Soybean | mitochondrion | 14.04 | 44.57 |
| CDX97051 | Canola | cytosol, extracellular, plastid | 14.38 | 39.62 |
| Os04t0403500-01 | Rice | plastid | 35.96 | 33.65 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:4329661 | EMBL:AK059938 | EMBL:AK103125 | ProteinID:BAD15460.1 |
| ProteinID:BAF09041.1 | ProteinID:BAS79215.1 | ProteinID:EEE57189.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | EnsemblPlantsGene:Os02g0556100 | EnsemblPlants:Os02t0556100-01 |
| PFAM:PF13460 | PANTHER:PTHR12126 | PANTHER:PTHR12126:SF8 | UniProt:Q6ZI86 | SUPFAM:SSF51735 | UniParc:UPI0000358A5B |
| RefSeq:XP_015622778.1 | SEG:seg | : | : | : | : |
Description
NAD(P)-binding domain containing protein. (Os02t0556100-01)
Coordinates
chr2:+:21027755..21038792
Molecular Weight (calculated)
31207.9 Da
IEP (calculated)
10.103
GRAVY (calculated)
0.021
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSAMTRLIR SSSPVVSPSR LSAANLLKNN NGKAFLSEDA SKRVEEPFKV EEAETVKVPP PSPDKLLVLG GNGFVGSHVC KEALDKGFTV ASLNRSGKPS
101: ISESWADKVI WNKGNLLEPD SLKDIMEGVS AVVSCVGGFG SNSYMYKING TANINAISVA AEKGIKRFVY VSAADFGFVN YLLQGYYEGK RATEAELLSK
201: FTYGGVILRP GFIHGTRRVG SVKIPLGLVG SPMQMVLQSA KPLTRLPLVG PLLTPPVSVA SVAKVAVRAA TDPVFPPGIV DVYGIMRYSD QK
101: ISESWADKVI WNKGNLLEPD SLKDIMEGVS AVVSCVGGFG SNSYMYKING TANINAISVA AEKGIKRFVY VSAADFGFVN YLLQGYYEGK RATEAELLSK
201: FTYGGVILRP GFIHGTRRVG SVKIPLGLVG SPMQMVLQSA KPLTRLPLVG PLLTPPVSVA SVAKVAVRAA TDPVFPPGIV DVYGIMRYSD QK
001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR
Arabidopsis Description
AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.