Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 2
- plasma membrane 2
- extracellular 1
- vacuole 1
- golgi 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G130300.1 | Wheat | plastid | 79.79 | 80.63 |
| TraesCS1A01G124100.1 | Wheat | plastid | 78.76 | 79.58 |
| TraesCS1B01G143000.1 | Wheat | plastid | 78.76 | 79.17 |
| OQU77594 | Sorghum | plastid | 76.17 | 75.0 |
| Zm00001d037747_P001 | Maize | plastid | 70.98 | 72.87 |
| HORVU1Hr1G028520.1 | Barley | plastid | 78.76 | 70.37 |
| Os01t0196500-01 | Rice | plastid | 71.5 | 68.66 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 60.1 | 61.7 |
| KRH23330 | Soybean | plastid | 51.81 | 54.35 |
| KRH10001 | Soybean | mitochondrion | 51.3 | 53.8 |
| KRH44167 | Soybean | plasma membrane | 48.7 | 53.41 |
| Solyc03g121460.1.1 | Tomato | plastid | 49.74 | 52.75 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 49.74 | 52.75 |
| KRH47141 | Soybean | plasma membrane | 48.19 | 52.25 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 49.74 | 49.74 |
| AT1G55190.1 | Thale cress | plasma membrane | 46.63 | 47.62 |
| CDX97509 | Canola | plasma membrane | 44.56 | 47.51 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 46.11 | 47.34 |
| CDY23634 | Canola | plasma membrane | 44.04 | 46.96 |
| Bra027406.1-P | Field mustard | plasma membrane | 43.01 | 45.86 |
| CDY08228 | Canola | plasma membrane | 44.56 | 45.5 |
| Bra014355.1-P | Field mustard | cytosol, plasma membrane, plastid | 44.56 | 45.5 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 44.04 | 44.97 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 43.52 | 44.92 |
| VIT_11s0016g02330.t01 | Wine grape | plastid | 43.01 | 43.92 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 42.49 | 43.85 |
| AT3G13710.1 | Thale cress | plasma membrane | 42.49 | 43.62 |
| CDY51735 | Canola | plasma membrane | 40.93 | 43.41 |
| Bra021504.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 40.93 | 43.41 |
| CDY37483 | Canola | plasma membrane | 40.41 | 42.86 |
| Bra037983.1-P | Field mustard | extracellular, plasma membrane | 31.09 | 42.86 |
| CDX81845 | Canola | plasma membrane | 39.9 | 42.54 |
| Bra031001.1-P | Field mustard | plasma membrane | 39.38 | 41.99 |
| Bra025954.1-P | Field mustard | plasma membrane | 39.9 | 41.85 |
| AT1G17700.1 | Thale cress | plasma membrane | 38.86 | 41.67 |
| CDY26225 | Canola | plasma membrane | 39.38 | 41.3 |
| CDY59501 | Canola | plasma membrane | 37.31 | 39.13 |
| KRH74153 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 38.34 | 37.0 |
| KRH49060 | Soybean | plasma membrane | 37.31 | 36.36 |
| AT4G29658.2 | Thale cress | plastid | 32.12 | 32.63 |
| Os03t0798400-01 | Rice | plasma membrane | 38.86 | 32.61 |
| CDY06788 | Canola | plastid | 32.64 | 32.47 |
| Os01t0827400-01 | Rice | extracellular, mitochondrion, plasma membrane | 24.35 | 32.41 |
| CDY43514 | Canola | mitochondrion | 28.5 | 31.43 |
| Bra011125.1-P | Field mustard | mitochondrion | 28.5 | 31.43 |
| Os05t0474400-01 | Rice | plasma membrane, vacuole | 33.68 | 29.55 |
| Os11t0107600-01 | Rice | plastid | 33.68 | 29.55 |
| Os12t0107600-00 | Rice | plastid | 33.16 | 29.09 |
| CDY37482 | Canola | plastid | 30.05 | 27.75 |
| CDY51734 | Canola | plastid | 29.53 | 27.27 |
| Bra021503.1-P | Field mustard | plastid | 29.02 | 26.92 |
| Bra021502.1-P | Field mustard | plastid | 26.94 | 24.3 |
| CDY51733 | Canola | plastid | 26.94 | 24.3 |
| CDY55133 | Canola | plasma membrane | 26.42 | 23.94 |
| Os03t0741600-00 | Rice | nucleus | 37.31 | 21.18 |
Protein Annotations
| EnsemblPlants:Os05t0200280-01 | EnsemblPlantsGene:Os05g0200280 | EntrezGene:107277179 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF10 | PFAM:PF03208 | ProteinID:AAT44309.1 | ProteinID:BAS92708.1 |
| RefSeq:XP_015637654.1 | RefSeq:XP_015637655.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00003A9299 | UniProt:Q6L4R1 |
| MapMan:22.8.4.3.2 | : | : | : | : | : |
Description
Similar to prenylated rab acceptor family protein. (Os05t0200280-01)
Coordinates
chr5:-:6255334..6257922
Molecular Weight (calculated)
20687.4 Da
IEP (calculated)
9.435
GRAVY (calculated)
0.495
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKYGTIPTS SSSDGPPPGS SSSSPLDFIS RAKARGATAL AERRPWRELA DPRAASVPRG LGGAYRRARA NLGHFSMNYA IVVLAVVFLS LLWHPVSLIV
101: FLACMVAWLF LYFLRDEPLA LCGRAVGEGA VLAVLSVLTL VLLLLTGATV NILTSLLVGV VIVLLHAVFH RPADSIDEEA GRYYTPVPPQ PSY
101: FLACMVAWLF LYFLRDEPLA LCGRAVGEGA VLAVLSVLTL VLLLLTGATV NILTSLLVGV VIVLLHAVFH RPADSIDEEA GRYYTPVPPQ PSY
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.