Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 3
- endoplasmic reticulum 6
- extracellular 4
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
plastid: 27992503 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG23692 | Sorghum | endoplasmic reticulum, extracellular | 97.41 | 97.41 |
| TraesCS5D01G101300.1 | Wheat | golgi | 97.41 | 97.41 |
| TraesCS5A01G089200.1 | Wheat | golgi | 96.89 | 96.89 |
| TraesCS5B01G095200.1 | Wheat | endoplasmic reticulum, extracellular | 96.89 | 96.89 |
| Os01t0338000-01 | Rice | plasma membrane | 96.37 | 96.37 |
| Solyc01g079540.2.1 | Tomato | plastid | 93.26 | 93.26 |
| PGSC0003DMT400023327 | Potato | endoplasmic reticulum, extracellular | 93.26 | 93.26 |
| AT4G02080.1 | Thale cress | endoplasmic reticulum | 93.26 | 93.26 |
| Bra000895.1-P | Field mustard | endoplasmic reticulum, extracellular | 93.26 | 93.26 |
| Os01t0254000-01 | Rice | plasma membrane | 93.26 | 93.26 |
| CDY22027 | Canola | endoplasmic reticulum, extracellular | 93.26 | 93.26 |
| CDX90955 | Canola | endoplasmic reticulum, extracellular | 93.26 | 93.26 |
| CDX91807 | Canola | endoplasmic reticulum, extracellular | 92.75 | 92.75 |
| KRG96730 | Soybean | endoplasmic reticulum | 92.23 | 92.23 |
| KRH68446 | Soybean | endoplasmic reticulum | 92.23 | 92.23 |
| Solyc06g009660.2.1 | Tomato | extracellular | 92.23 | 92.23 |
| VIT_05s0077g01230.t01 | Wine grape | endoplasmic reticulum, extracellular | 92.23 | 92.23 |
| PGSC0003DMT400018800 | Potato | cytosol | 92.23 | 92.23 |
| VIT_07s0005g01330.t01 | Wine grape | endoplasmic reticulum, extracellular | 92.23 | 92.23 |
| PGSC0003DMT400007183 | Potato | endoplasmic reticulum, golgi | 91.71 | 91.71 |
| KRH50760 | Soybean | endoplasmic reticulum | 91.71 | 91.71 |
| KRH33832 | Soybean | endoplasmic reticulum | 91.71 | 91.71 |
| Solyc01g100350.2.1 | Tomato | plastid | 91.71 | 91.71 |
| AT3G62560.1 | Thale cress | endoplasmic reticulum | 91.71 | 91.71 |
| KRG92955 | Soybean | endoplasmic reticulum, extracellular | 91.71 | 91.71 |
| KRH02328 | Soybean | endoplasmic reticulum | 91.19 | 91.19 |
| AT1G56330.1 | Thale cress | endoplasmic reticulum | 91.19 | 91.19 |
| KRH50759 | Soybean | endoplasmic reticulum | 91.19 | 91.19 |
| CDY65544 | Canola | endoplasmic reticulum, extracellular | 90.16 | 91.1 |
| KRH02329 | Soybean | endoplasmic reticulum, extracellular | 90.67 | 90.67 |
| Bra018576.1-P | Field mustard | endoplasmic reticulum, golgi | 90.67 | 90.67 |
| CDX95000 | Canola | endoplasmic reticulum, golgi | 90.67 | 90.67 |
| CDX93520 | Canola | endoplasmic reticulum, golgi | 90.67 | 90.67 |
| CDY59269 | Canola | endoplasmic reticulum, extracellular | 91.19 | 90.26 |
| CDY41713 | Canola | endoplasmic reticulum, extracellular | 91.19 | 90.26 |
| Bra027937.1-P | Field mustard | endoplasmic reticulum, extracellular | 91.19 | 90.26 |
| CDY31105 | Canola | endoplasmic reticulum, golgi | 90.16 | 90.16 |
| Bra038169.1-P | Field mustard | endoplasmic reticulum, extracellular | 90.67 | 89.74 |
| CDY39001 | Canola | endoplasmic reticulum, extracellular | 90.67 | 89.74 |
| CDY32159 | Canola | endoplasmic reticulum, golgi | 89.64 | 89.64 |
| KRH37008 | Soybean | endoplasmic reticulum | 89.12 | 89.12 |
| KRH11980 | Soybean | endoplasmic reticulum, extracellular | 89.12 | 89.12 |
| PGSC0003DMT400068658 | Potato | endoplasmic reticulum, extracellular | 87.56 | 87.56 |
| Solyc01g060130.2.1 | Tomato | endoplasmic reticulum, extracellular | 87.05 | 87.05 |
| AT1G09180.1 | Thale cress | extracellular | 86.01 | 86.01 |
| VIT_16s0013g00170.t01 | Wine grape | cytosol | 46.63 | 83.33 |
| AT1G02620.1 | Thale cress | endoplasmic reticulum | 49.74 | 78.69 |
| VIT_05s0165g00230.t01 | Wine grape | cytosol | 67.36 | 76.47 |
| Os06t0225000-00 | Rice | endoplasmic reticulum | 76.68 | 76.29 |
| VIT_14s0060g01340.t01 | Wine grape | endoplasmic reticulum, extracellular | 81.87 | 66.67 |
| VIT_02s0033g01130.t01 | Wine grape | cytosol | 44.04 | 47.75 |
| Bra036294.1-P | Field mustard | endoplasmic reticulum | 92.75 | 43.87 |
| CDY07095 | Canola | endoplasmic reticulum | 92.75 | 43.77 |
| Os03t0200800-01 | Rice | plasma membrane | 32.12 | 33.7 |
| Os02t0732500-01 | Rice | plasma membrane | 30.57 | 32.07 |
Protein Annotations
| MapMan:22.4.2.1 | Gene3D:3.40.50.300 | EntrezGene:4352510 | ProteinID:ABA98928.1 | EMBL:AK060332 | EMBL:AK099125 |
| ProteinID:BAF30035.1 | ProteinID:BAT17636.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016192 | InterPro:IPR006687 |
| EnsemblPlantsGene:Os12g0560300 | EnsemblPlants:Os12t0560300-01 | InterPro:P-loop_NTPase | PFAM:PF00025 | PRINTS:PR00328 | PFscan:PS51422 |
| PANTHER:PTHR11711 | PANTHER:PTHR11711:SF165 | UniProt:Q2QNM5 | SMART:SM00177 | SMART:SM00178 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF/SAR | InterPro:Small_GTPase_SAR1 | TIGRFAMs:TIGR00231 | UniParc:UPI0000680E17 | RefSeq:XP_015618198.1 |
| SEG:seg | : | : | : | : | : |
Description
ARF-like protein 1fSimilar to NTGB2 (Fragment). (Os12t0560300-01)
Coordinates
chr12:-:22939792..22943689
Molecular Weight (calculated)
22030.6 Da
IEP (calculated)
7.648
GRAVY (calculated)
-0.163
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLVDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFSESKKEL DALLSDDSLA TVPFLILGNK IDIPYAASEE ELRYHMGLSN FTTGKGRVSL GESNVRPLEV FMCSIVRKMG YGDGFKWVSQ YIK
101: ERFSESKKEL DALLSDDSLA TVPFLILGNK IDIPYAASEE ELRYHMGLSN FTTGKGRVSL GESNVRPLEV FMCSIVRKMG YGDGFKWVSQ YIK
001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK
Arabidopsis Description
SAR1ASAR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5S8]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.