Factsheet for Os07t0272400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0196500-01
Os03t0207400-01
Os05t0200280-01
Os06t0213200-01
Os12t0580900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	Os01t0196500-01	AT3G13710.1	21798944
AT3G43230.1	Os05t0200280-01	AT3G13710.1	21798944
AT3G43230.1	Os06t0213200-01	AT4G33350.1	21798944
AT3G43230.1	Os03t0207400-01	AT4G33920.1	21798944
AT3G43230.1	Os12t0580900-01	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G016350.1	Barley	cytosol	78.67	79.31
TraesCS3D01G091300.1	Wheat	cytosol	78.47	78.63
TraesCS3A01G091400.1	Wheat	cytosol	77.26	77.73
EER96209	Sorghum	cytosol	77.26	77.42
Zm00001d019348_P001	Maize	cytosol	76.86	77.02
TraesCS3B01G106600.1	Wheat	cytosol	76.26	76.41
GSMUA_Achr3P10170_001	Banana	mitochondrion	60.56	71.33
OQU77712	Sorghum	cytosol	41.25	63.66
VIT_11s0016g00400.t01	Wine grape	cytosol	60.16	62.95
KRH02544	Soybean	cytosol	59.36	60.95
KRH19396	Soybean	cytosol	58.75	60.33
Solyc07g017500.2.1	Tomato	cytosol	58.35	59.79
AT3G43230.1	Thale cress	cytosol	58.15	59.59
Os07t0616900-01	Rice	cytosol	54.53	58.66
PGSC0003DMT400041172	Potato	cytosol	5.03	47.17
CDY30955	Canola	cytosol	54.12	47.11
CDY44837	Canola	cytosol	54.33	45.15
Bra019445.1-P	Field mustard	cytosol	54.33	42.19
Os02t0233100-01	Rice	cytosol	40.04	37.2
Os06t0552400-02	Rice	cytosol	39.24	35.52

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:4342899	EMBL:AK102876	ProteinID:BAC83843.1	ProteinID:BAF21262.1
ProteinID:BAT00945.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0032587
GO:GO:0035091	GO:GO:0046872	GO:GO:1900027	InterPro:IPR013083	InterPro:IPR017455	EnsemblPlantsGene:Os07g0272400
EnsemblPlants:Os07t0272400-01	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25
UniProt:Q6Z4J7	SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI00001BF48B	RefSeq:XP_015644744.1	RefSeq:XP_015644745.1
InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0272400-01)

Coordinates

chr7:+:10064207..10068002

Molecular Weight (calculated)

53705.0 Da

IEP (calculated)

7.845

GRAVY (calculated)

-0.117

Length

497 amino acids

Sequence
(BLAST)

001: MTMATSREVF KYHPLPTPGV ENSFKDEIQS KVLGTIGDVM NSFDPKSFPQ HVEGALGTAG NIINSFESKL AEHKQFDFGG KTNFYGYDCA DDGWGSAPLK
101: ADKPVNLRNL LGGLIAIISR GGKNSEIQPP KDTKSSVAFL GSGSDGETFL HASVYVPSAP PLLDEEALNY NVYRVVIEAE PPEWLPDSYA NSCMQCAASF
201: TVVTRGRHHC RFCGGIFCRT CSKGRCLLPA KFRERNPQRV CDACYDRLDP LQNLFINSIS NATQTAKHDV MDWTSTRGWL NLPIGLTMEH EIYKAANSVR
301: SYSQIARLNP ERSIPHAVLS GASGLAILTV VKAGALLTYK LGTGLVVARR SDGSWSPPSA IVSVGLGWGA QVGAELMDFI IVLRGLEAVR TFSSQMHFSV
401: GAGLSAAAGP VGRVLEADLR AGDKGSGVCY TYSCSKGAFI GVSLEGNFVA TRRDANLRFY GDPYLTTSDI LMGDMQRPNA AKFLYTALDG LYSGLSR

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.