Factsheet for Bra019445.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011434.1-P
Bra014069.1-P
Bra021504.1-P
Bra027406.1-P
Bra032216.1-P
Bra034592.1-P
Bra036972.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	Bra014069.1-P	AT1G47260.1	21798944
AT3G43230.1	Bra032216.1-P	AT1G47260.1	21798944
AT3G43230.1	Bra021504.1-P	AT3G13710.1	21798944
AT3G43230.1	Bra027406.1-P	AT3G13710.1	21798944
AT3G43230.1	Bra011434.1-P	AT4G33350.1	21798944
AT3G43230.1	Bra034592.1-P	AT4G33920.1	21798944
AT3G43230.1	Bra036972.1-P	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44837	Canola	cytosol	72.03	77.09
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	11.41	73.74
AT3G43230.1	Thale cress	cytosol	51.09	67.42
GSMUA_AchrUn_...	Banana	cytosol, extracellular	7.97	67.11
GSMUA_Achr3P10170_001	Banana	mitochondrion	43.59	66.11
GSMUA_AchrUn_...	Banana	extracellular	7.5	64.0
VIT_11s0016g00400.t01	Wine grape	cytosol	46.72	62.95
KRH19396	Soybean	cytosol	47.5	62.81
KRH02544	Soybean	cytosol	46.72	61.78
Solyc07g017500.2.1	Tomato	cytosol	45.94	60.62
Os07t0616900-01	Rice	cytosol	42.97	59.52
TraesCS2A01G168100.1	Wheat	cytosol	42.66	59.22
TraesCS2B01G194100.1	Wheat	cytosol	42.5	59.0
TraesCS2D01G175500.1	Wheat	cytosol	42.34	58.79
HORVU2Hr1G030860.2	Barley	cytosol	42.03	58.35
GSMUA_Achr8P30460_001	Banana	cytosol	42.81	58.17
OQU90261	Sorghum	cytosol	41.56	57.7
Zm00001d022148_P001	Maize	cytosol	41.56	57.58
EER96209	Sorghum	cytosol	43.28	55.85
TraesCS3D01G091300.1	Wheat	cytosol	42.81	55.24
Zm00001d019348_P001	Maize	cytosol	42.66	55.04
HORVU3Hr1G016350.1	Barley	cytosol	42.34	54.97
PGSC0003DMT400041172	Potato	cytosol	4.53	54.72
TraesCS3A01G091400.1	Wheat	cytosol	42.03	54.45
Os07t0272400-01	Rice	cytosol	42.19	54.33
TraesCS3B01G106600.1	Wheat	cytosol	42.03	54.23
OQU77712	Sorghum	cytosol	27.03	53.73
Bra032337.1-P	Field mustard	cytosol	31.25	33.28

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EnsemblPlantsGene:Bra019445	EnsemblPlants:Bra019445.1	EnsemblPlants:Bra019445.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR017455	UniProt:M4DSF2	PFAM:PF01363
PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	SMART:SM00064	SUPFAM:SSF57903
UniParc:UPI000253F164	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT3G43230 (E=2e-162) | zinc finger (FYVE type) family protein

Coordinates

chrA06:-:13612853..13621103

Molecular Weight (calculated)

69819.1 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.128

Length

640 amino acids

Sequence
(BLAST)

001: MSIEKSSIED HFDGVTSADA LSEDEVVIGR LTIQKLRAEL EVARVRDLER AVELEATNKK LRMTKFGFVH MASLNGKMKF KYEDDDDGYG DPSCVESKIE
101: PNYPIMDDSE EDYVDEGFDS AEPNQGNVDV NLKNVLSGLI AIVTGSNKQP PSSSSSNQNV SFLGSSVYIP SAPPLLEPNY SVYKDLLEAE PPHWLPDSST
201: TTCMHCSSPF TAITCGRHHC RFCGGIFCRN CSRGRCLMPT RFRQRNPQRV CDSCYERLDP LQGVLINSIS NAVQVAKHDV VDWTCARGWL NLPIGLSMED
301: EIYKASNTLR GYSQVARSDP EKSIPLALLR RAHGLAILTV AKAGAFLSYN LGTGLVISRR SDGSWSAPSA LLSLGLGWGA LVGGELMDFI IVLHDLKAVK
401: TFCSRMHFSL GAGCSAAAGP LGRVLEADLR AGDRGSGLCY TYSRCKGAFV GVSLEGNVVT TRRDTNVNFY GDPYLSTSDI LLGMVDQPKA AQPLYTALND
501: LYAGAKAWPS VTSELSPFST VHPVTCRATA STTFLMYLRH KGLGKDSEDL RSDFNDDMRS SLSKFLFGGQ VCGSPSSEVL LLQAFDQQCH VTCVICTVVR
601: HAFFKLGLAA LWDSVFFSGP VLNGIHLQQT KSKNHAKVAV

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.