Factsheet for TraesCS2B01G194100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1
TraesCS4A01G050000.1
TraesCS4B01G254700.1
TraesCS4D01G254500.1
TraesCS5A01G072500.1
TraesCS5B01G078500.1
TraesCS5D01G085200.1
TraesCS7A01G171800.1
TraesCS7B01G076600.1
TraesCS7D01G172300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	TraesCS1A01G124100.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS1B01G143000.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS1D01G130300.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS3A01G104300.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS3B01G122600.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS3D01G106500.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS7A01G171800.1	AT4G33350.1	21798944
AT3G43230.1	TraesCS7B01G076600.1	AT4G33350.1	21798944
AT3G43230.1	TraesCS7D01G172300.1	AT4G33350.1	21798944
AT3G43230.1	TraesCS4A01G050000.1	AT4G33920.1	21798944
AT3G43230.1	TraesCS4B01G254700.1	AT4G33920.1	21798944
AT3G43230.1	TraesCS4D01G254500.1	AT4G33920.1	21798944
AT3G43230.1	TraesCS5A01G072500.1	AT4G33920.1	21798944
AT3G43230.1	TraesCS5B01G078500.1	AT4G33920.1	21798944
AT3G43230.1	TraesCS5D01G085200.1	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G175500.1	Wheat	cytosol	97.83	97.83
HORVU2Hr1G030860.2	Barley	cytosol	97.61	97.61
TraesCS2A01G168100.1	Wheat	cytosol	97.61	97.61
Os07t0616900-01	Rice	cytosol	87.64	87.45
OQU90261	Sorghum	cytosol	83.3	83.3
Zm00001d022148_P001	Maize	cytosol	82.86	82.68
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	16.27	75.76
GSMUA_AchrUn_...	Banana	cytosol, extracellular	11.5	69.74
GSMUA_AchrUn_...	Banana	extracellular	10.63	65.33
GSMUA_Achr8P30460_001	Banana	cytosol	64.86	63.48
VIT_11s0016g00400.t01	Wine grape	cytosol	64.64	62.74
Solyc07g017500.2.1	Tomato	cytosol	64.43	61.24
KRH19396	Soybean	cytosol	63.34	60.33
KRH02544	Soybean	cytosol	63.12	60.12
AT3G43230.1	Thale cress	cytosol	62.04	58.97
TraesCS3B01G106600.1	Wheat	cytosol	62.47	58.06
PGSC0003DMT400041172	Potato	cytosol	5.64	49.06
CDY30955	Canola	cytosol	58.57	47.29
CDY44837	Canola	cytosol	59.22	45.65
Bra019445.1-P	Field mustard	cytosol	59.0	42.5
TraesCS7B01G272800.1	Wheat	cytosol	42.52	37.19

Protein Annotations

EnsemblPlants:TraesCS2B01G194100.1	EnsemblPlantsGene:TraesCS2B01G194100	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR013083	InterPro:IPR017455	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178
SEG:seg	SMART:SM00064	SUPFAM:SSF57903	TIGR:cd11526	MapMan:35.2	:

Description

No Description!

Coordinates

chr2B:-:171024780..171026959

Molecular Weight (calculated)

49942.6 Da

IEP (calculated)

7.348

GRAVY (calculated)

-0.110

Length

461 amino acids

Sequence
(BLAST)

001: METPNEVMSY SSLSKIDSYY SQTAPMSDLA PGNTYPVHDY LYEPSLEPDF PSEYGSREDP FPTAHASSTI NLKTVLGGLA AIVSRPSKIG DDASRQQSFS
101: TDVSFLGAGK DGDLHSSVCV PSAPPLLEAN ALQFSAYREV LQADPPEWLP DSSASVCLQC SFPFTALTRG RHHCRFCGGI FCKECSKGRC LMPMKFRLRD
201: PQRVCDACYD RLDPLQALLI NYNSNAMQPA KHDVMDWTST RSWLNLPVGL SMEYEIYKAT NTLRKYCQVS RLNPEKSIPS SILKGAKGLA VLTVAKAGAV
301: LTYKMGTGLV VARRSDGSWS APSAILSVGL GWGVQIGGEL TDFIIVLHDL KAVKAFSSRM HLSLGAGLSA AAGPIGRALE ADVRASEKGS GICYTYSCSK
401: GAFVGVSLEG NVVTTRSDTN LRFYGDAYLT TTDILFGRVE KPRAAQPLYS ALDDLFSKMV C

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.