CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68969
CDX72438
CDX75346
CDX97509
CDY17034
CDY23634
CDY23649
CDY28332
CDY37483
CDY47592
CDY49385
CDY51735
CDY51944
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	CDY17034	AT1G47260.1	21798944
AT3G43230.1	CDY23649	AT1G47260.1	21798944
AT3G43230.1	CDY47592	AT1G47260.1	21798944
AT3G43230.1	CDY67628	AT1G47260.1	21798944
AT3G43230.1	CDX97509	AT3G13710.1	21798944
AT3G43230.1	CDY23634	AT3G13710.1	21798944
AT3G43230.1	CDY37483	AT3G13710.1	21798944
AT3G43230.1	CDY51735	AT3G13710.1	21798944
AT3G43230.1	CDX68969	AT4G33350.1	21798944
AT3G43230.1	CDX75346	AT4G33350.1	21798944
AT3G43230.1	CDX72438	AT4G33920.1	21798944
AT3G43230.1	CDY28332	AT4G33920.1	21798944
AT3G43230.1	CDY49385	AT4G33920.1	21798944
AT3G43230.1	CDY51944	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	12.78	73.74
CDY44837	Canola	cytosol	75.13	71.74
AT3G43230.1	Thale cress	cytosol	59.02	69.48
GSMUA_AchrUn_...	Banana	cytosol, extracellular	8.93	67.11
GSMUA_Achr3P10170_001	Banana	mitochondrion	49.21	66.59
GSMUA_AchrUn_...	Banana	extracellular	8.41	64.0
KRH19396	Soybean	cytosol	53.42	63.02
VIT_11s0016g00400.t01	Wine grape	cytosol	52.19	62.74
KRH02544	Soybean	cytosol	52.36	61.78
Solyc07g017500.2.1	Tomato	cytosol	51.66	60.82
TraesCS2B01G194100.1	Wheat	cytosol	47.29	58.57
TraesCS2A01G168100.1	Wheat	cytosol	47.11	58.35
Os07t0616900-01	Rice	cytosol	47.11	58.23
HORVU2Hr1G030860.2	Barley	cytosol	46.94	58.13
TraesCS2D01G175500.1	Wheat	cytosol	46.94	58.13
GSMUA_Achr8P30460_001	Banana	cytosol	47.64	57.75
OQU90261	Sorghum	cytosol	46.23	57.27
Zm00001d022148_P001	Maize	cytosol	46.23	57.14
EER96209	Sorghum	cytosol	48.69	56.05
Zm00001d019348_P001	Maize	cytosol	48.16	55.44
PGSC0003DMT400041172	Potato	cytosol	5.08	54.72
TraesCS3D01G091300.1	Wheat	cytosol	47.46	54.64
HORVU3Hr1G016350.1	Barley	cytosol	46.94	54.36
TraesCS3B01G106600.1	Wheat	cytosol	47.11	54.23
Os07t0272400-01	Rice	cytosol	47.11	54.12
TraesCS3A01G091400.1	Wheat	cytosol	46.76	54.05
OQU77712	Sorghum	cytosol	30.47	54.04
CDX99856	Canola	cytosol	34.68	31.28
CDY26313	Canola	cytosol	34.5	31.17

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078GWU1	UniProt:A0A078GWU1	EnsemblPlants:CDY30955	ProteinID:CDY30955
ProteinID:CDY30955.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00046527001	InterPro:IPR013083
InterPro:IPR017455	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25
SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI0004EF1923	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaA06g19580DBnaA06g19580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWU1]

Coordinates

chrLK032264:-:414017..416985

Molecular Weight (calculated)

61972.7 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.125

Length

571 amino acids

Sequence
(BLAST)

001: MASLNGKMKF KYEDDDDGYG DPSSVESKIE PNYPIMDDSE EDYVDEGFDS AEPNQGKVDV NLKNVLSGLI AIVTGSNKQP PPSSSSSNQN VSFLGSSVYI
101: PSAPPLLEPN YSVYKDLLEA EPPHWLPDSS TTTCMHCSSP FTAITCGRHH CRFCGGIFCR NCSRGRCLMP TRFRERNPQR VCDSCYERLD PLQGVLINSI
201: SNAVQVAKHD VVDWTCARGW LNLPIGLSME DEIYKASNTL RGYSQVARSD PEKSIPLALL RRAHGLAILT VAKAGAFLSY NLGTGLVISR RSDGSWSAPS
301: ALLSLGLGWG ALVGGELMDF IIVLHDLKAV KTFCSRMHFS LGAGCSAAAG PLGRVLEADL RAGDRGSGLC YTYSRCKGAF VGVSLEGNVV TTRRDTNVNF
401: YGDPYLSTSD ILLGMVDQPK AAQPLYTALN DLYAGAKARP SVTSELSPFS TVHPVTCRAT ASTTFLMYLR HKGLGKDSED LRSDFNDDMR SSLSKFLFGG
501: QVCGSPSSEV LLLQAFDQQC HVTCVICTVV RHAFFKLGLA ALWDSVFFSG PVLNGIHLQQ TKSKNHAKVA V

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.