Factsheet for HORVU2Hr1G030860.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU3Hr1G018940.2
HORVU4Hr1G069380.3
HORVU5Hr1G018930.2
HORVU7Hr1G035680.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	HORVU1Hr1G028520.1	AT3G13710.1	21798944
AT3G43230.1	HORVU3Hr1G018940.2	AT3G13710.1	21798944
AT3G43230.1	HORVU7Hr1G035680.1	AT4G33350.1	21798944
AT3G43230.1	HORVU4Hr1G069380.3	AT4G33920.1	21798944
AT3G43230.1	HORVU5Hr1G018930.2	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G194100.1	Wheat	cytosol	97.61	97.61
TraesCS2D01G175500.1	Wheat	cytosol	96.96	96.96
TraesCS2A01G168100.1	Wheat	cytosol	96.96	96.96
Os07t0616900-01	Rice	cytosol	86.55	86.36
OQU90261	Sorghum	cytosol	82.65	82.65
Zm00001d022148_P001	Maize	cytosol	82.0	81.82
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	16.27	75.76
GSMUA_AchrUn_...	Banana	cytosol, extracellular	11.28	68.42
GSMUA_AchrUn_...	Banana	extracellular	10.41	64.0
GSMUA_Achr8P30460_001	Banana	cytosol	64.43	63.06
VIT_11s0016g00400.t01	Wine grape	cytosol	64.21	62.32
Solyc07g017500.2.1	Tomato	cytosol	63.56	60.41
KRH19396	Soybean	cytosol	62.69	59.71
KRH02544	Soybean	cytosol	62.47	59.5
AT3G43230.1	Thale cress	cytosol	61.82	58.76
HORVU3Hr1G016350.1	Barley	cytosol	60.3	56.39
PGSC0003DMT400041172	Potato	cytosol	5.64	49.06
CDY30955	Canola	cytosol	58.13	46.94
CDY44837	Canola	cytosol	58.79	45.32
Bra019445.1-P	Field mustard	cytosol	58.35	42.03
HORVU7Hr1G088960.1	Barley	endoplasmic reticulum	41.87	31.8

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:HORVU2Hr1G030860
EnsemblPlants:HORVU2Hr1G030860.2	InterPro:IPR013083	InterPro:IPR017455	UniProt:M0V705	PFAM:PF01363	PFAM:PF04366
PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI000295EA8C
InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chrchr2H:-:115314927..115318267

Molecular Weight (calculated)

49844.5 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.105

Length

461 amino acids

Sequence
(BLAST)

001: METPNDLMSY SSLSKINSYH SQAGPMSDLA PGNTYPVHDY LYEPSLEPDF PSEYGAREDP FPTAQASSTI NLKTVLGGLA AIVSRPSKIG DDASRQQSFS
101: TDVSFLGAGK DGDLHSSVCV PSAPPLLEAN ALQFSAYREV LQADPPEWLP DSSASVCLQC SCPFTALTRG RHHCRFCGGI FCKECSKGRC LMPMKFRLRD
201: PQRVCDACYE RLDPLQALLI NYNSNAMQPA KHDVMDWTST RSWLNLPVGL SMEYEIYKAT NTLRKYCQVS RLNPEKSIPS SILKGAKGLA VLTVAKAGAV
301: LTYKMGTGLV VARRSDGSWS APSAILSVGL GWGVQIGGEL TDFIIVLHDL KVVKAFSSRM HLSLGAGLSA AAGPIGRALE ADVRASEKGS GICYTYSCSK
401: GAFVGVSLEG NVVTTRSDTN LRFYGDAYLT TTDILFGRVE KPRAAQPLYS ALDDLFSKMV C

Best Arabidopsis Sequence Match ( AT1G29800.1 )
(BLAST)

001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGSETVR
501: SPAISPLSED

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.