Factsheet for Os07t0616900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0196500-01
Os03t0207400-01
Os05t0200280-01
Os06t0213200-01
Os12t0580900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	Os01t0196500-01	AT3G13710.1	21798944
AT3G43230.1	Os05t0200280-01	AT3G13710.1	21798944
AT3G43230.1	Os06t0213200-01	AT4G33350.1	21798944
AT3G43230.1	Os03t0207400-01	AT4G33920.1	21798944
AT3G43230.1	Os12t0580900-01	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G194100.1	Wheat	cytosol	87.45	87.64
TraesCS2D01G175500.1	Wheat	cytosol	87.23	87.42
TraesCS2A01G168100.1	Wheat	cytosol	87.23	87.42
HORVU2Hr1G030860.2	Barley	cytosol	86.36	86.55
OQU90261	Sorghum	cytosol	84.42	84.6
Zm00001d022148_P001	Maize	cytosol	84.2	84.2
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	15.8	73.74
GSMUA_AchrUn_...	Banana	cytosol, extracellular	11.69	71.05
GSMUA_AchrUn_...	Banana	extracellular	10.82	66.67
GSMUA_Achr8P30460_001	Banana	cytosol	65.58	64.33
VIT_11s0016g00400.t01	Wine grape	cytosol	64.07	62.32
Solyc07g017500.2.1	Tomato	cytosol	63.64	60.62
KRH19396	Soybean	cytosol	63.42	60.54
KRH02544	Soybean	cytosol	63.2	60.33
AT3G43230.1	Thale cress	cytosol	62.34	59.38
Os07t0272400-01	Rice	cytosol	58.66	54.53
PGSC0003DMT400041172	Potato	cytosol	5.41	47.17
CDY30955	Canola	cytosol	58.23	47.11
CDY44837	Canola	cytosol	59.74	46.15
Bra019445.1-P	Field mustard	cytosol	59.52	42.97
Os02t0233100-01	Rice	cytosol	42.64	36.82
Os06t0552400-02	Rice	cytosol	41.34	34.79

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:4343911	ProteinID:BAC79863.1	ProteinID:BAC79992.1	ProteinID:BAF22193.1
ProteinID:BAT02659.1	ProteinID:EAZ40664.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0032587	GO:GO:0035091	GO:GO:0046872	GO:GO:1900027	InterPro:IPR013083	InterPro:IPR017455
EnsemblPlantsGene:Os07g0616900	EnsemblPlants:Os07t0616900-01	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629
PANTHER:PTHR15629:SF25	UniProt:Q7X6I6	SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI00001B3A6B	RefSeq:XP_015647796.1
InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0616900-01)

Coordinates

chr7:+:25435750..25439659

Molecular Weight (calculated)

50196.5 Da

IEP (calculated)

7.332

GRAVY (calculated)

-0.181

Length

462 amino acids

Sequence
(BLAST)

001: MGAPNEVTSY SSLSKIDSNN QGGHLSSLVP ANIYPAQDYL YEPSLEPDFP SEYDSREDPF VPTRASSNIN LKTVLTGLAA IVSGTNKNQD NTLQQQSFST
101: DVSFLGFDKD GDVNVHPSVC VPSAPPLLET NALQYSAYRE VLQADPPEWL PDSSTSVCLQ CSLPFTALTR GRHHCRFCGG IFCKDCSKGR CLMPMKFRQR
201: DPQRVCDACY DRLDPLQGIL INYNSNAMQP AKHDVMDWTS TRSWLNLPVG LSMEYEIYKA TNTLNRYCQV ARLNPEKSIP SSILKGAKGL AVITVAKAGA
301: VLTYKVGTGL VVARRSDGSW SAPSAIASVG LGWGVQFGGE LTDFIIVLHD RKAVKAFSSR MHLSLGAGLS AAAGPIGRAF EADVRASEKG SGLCYTYSCS
401: KGAFVGVSLE GNVVTTRSET NLRFYGDAYL TTTDILFGKV EKPRAAQPLY SALDDLFSKM VY

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.