Factsheet for Os06t0552400-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G272800.1	Wheat	cytosol	71.58	74.57
TraesCS7A01G354900.1	Wheat	cytosol	71.58	74.29
TraesCS7D01G367900.1	Wheat	cytosol	70.86	73.53
EER89914	Sorghum	cytosol	69.22	71.16
Os02t0233100-01	Rice	cytosol	63.02	64.67
HORVU7Hr1G088960.1	Barley	endoplasmic reticulum	70.31	63.59
GSMUA_Achr5P06610_001	Banana	cytosol	53.19	60.71
GSMUA_Achr7P13820_001	Banana	cytosol	55.37	58.02
AT1G29800.1	Thale cress	cytosol	50.82	54.71
VIT_19s0014g00860.t01	Wine grape	cytosol	51.37	54.02
KRH21202	Soybean	cytosol	52.82	53.7
KRH11072	Soybean	cytosol	51.73	52.59
Zm00001d046304_P001	Maize	cytosol, plastid	66.12	52.23
VIT_10s0003g01800.t01	Wine grape	cytosol	49.0	51.24
Bra032337.1-P	Field mustard	cytosol	50.09	45.76
CDX99856	Canola	cytosol	50.82	44.08
CDY26313	Canola	cytosol	50.09	43.51
PGSC0003DMT400073054	Potato	cytosol	52.28	41.59
Solyc02g071980.2.1	Tomato	cytosol	52.28	41.59
Os07t0616900-01	Rice	cytosol	34.79	41.34
Os07t0272400-01	Rice	cytosol	35.52	39.24

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:4341271	EMBL:AK121387	ProteinID:BAD53663.1	ProteinID:BAF19755.1
ProteinID:BAS98197.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0032587
GO:GO:0035091	GO:GO:0046872	GO:GO:1900027	InterPro:IPR013083	InterPro:IPR017455	EnsemblPlantsGene:Os06g0552400
EnsemblPlants:Os06t0552400-02	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF9
UniProt:Q5Z9E4	SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI0000446E0A	RefSeq:XP_015644232.1	InterPro:Ysc84_actin-binding
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Similar to zinc ion binding protein. (Os06t0552400-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0552400-02)

Coordinates

chr6:-:20946146..20952655

Molecular Weight (calculated)

59246.1 Da

IEP (calculated)

4.817

GRAVY (calculated)

-0.166

Length

549 amino acids

Sequence
(BLAST)

001: MAANDRLYPP IDPYALEPPQ FGDDAACGGG GGGGEVRVRD PSAVMWDEEP EASPSSPEEP VTEGTHTFEQ GPKVHLAENN VVGSAGVGDV YEYSREMTTM
101: QELVENTYYD CALRDQTGMW VPPSVPPMTK HDHEEWQKGF GANGGYFAEE DLWDIDEENK EMTMWDVLAA MVSAGKDKVL SVVSYDFGRQ GMSLISHLLL
201: EEACKDKADT LEDASVGLEH ALLEAEPTVW LPDSAAPSCM LCGARFHPII CSRHHCRFCG GLFCGGCSKG RSLMPPKFST SEPQRVCDVC GVRLECIQPY
301: LMNKISRACQ IPTNDLTDLS TLRSWLNLPW ARTMEYEIYK AVNSIYGYFK VGSLKPEKSI PDSILRQAKG LAIITVVNVG MMVTYKIGTG LVVARRADGS
401: WSPPSAISTY GVGYGVQAGG ELADYIIVLR NTDAIRTFSG NAHLSVGAGI SASAGHLGRV AEADFRAGDG GYAACYTYSC SKGAFVGCAL NGSVVSTRHS
501: ANAQFYGGPI KASEILLGSV SRPAAAATLY RALSKLFEKV ENYSSPLDF

Best Arabidopsis Sequence Match ( AT1G29800.1 )
(BLAST)

001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGSETVR
501: SPAISPLSED

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.