CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11072	Soybean	cytosol	88.7	88.7
VIT_10s0003g01800.t01	Wine grape	cytosol	67.22	69.14
AT1G29800.1	Thale cress	cytosol	62.22	65.88
GSMUA_Achr5P06610_001	Banana	cytosol	58.33	65.49
GSMUA_Achr7P13820_001	Banana	cytosol	60.0	61.83
Bra032337.1-P	Field mustard	cytosol	62.59	56.24
TraesCS7D01G367900.1	Wheat	cytosol	54.44	55.58
TraesCS7B01G272800.1	Wheat	cytosol	54.07	55.41
Os02t0233100-01	Rice	cytosol	54.63	55.14
Zm00001d053541_P002	Maize	cytosol	53.15	55.09
EES04807	Sorghum	cytosol	53.89	54.7
TraesCS7A01G354900.1	Wheat	cytosol	53.52	54.63
CDX99856	Canola	cytosol	63.52	54.19
EER89914	Sorghum	cytosol	53.15	53.75
CDY26313	Canola	cytosol	62.59	53.48
Zm00001d016234_P001	Maize	cytosol	52.59	53.28
Os06t0552400-02	Rice	cytosol	53.7	52.82
Solyc02g071980.2.1	Tomato	cytosol	64.63	50.58
PGSC0003DMT400073054	Potato	cytosol	64.26	50.29
HORVU7Hr1G088960.1	Barley	endoplasmic reticulum	54.63	48.6
KRH19396	Soybean	cytosol	39.81	44.42
KRH02544	Soybean	cytosol	39.63	44.21
Zm00001d046304_P001	Maize	cytosol, plastid	53.15	41.3

Protein Annotations

EntrezGene:100813648	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02008347	EnsemblPlantsGene:GLYMA_13G225400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0032587	GO:GO:0035091	GO:GO:0046872
GO:GO:1900027	UniProt:I1M1P3	InterPro:IPR013083	InterPro:IPR017455	EnsemblPlants:KRH21202	ProteinID:KRH21202
ProteinID:KRH21202.1	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF9
SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI000233AC62	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:33806792..33811100

Molecular Weight (calculated)

59515.3 Da

IEP (calculated)

4.981

GRAVY (calculated)

-0.231

Length

540 amino acids

Sequence
(BLAST)

001: MEGKILDSQN QVKFVENLSA RVSSCSLGDK ISYSDSPLDD EVDGRRSNCV TKEYCDSFFN DSTEGHCINS SRLYLESPEK QMEKNNEDME SSANLQKRGK
101: YFYYDTPLQE DTGVWIPVSV PPMLEDDHKE WTKGFHSNGG YFPDDDMGWN QYVGDERELT MWDVLAEMLL VARGKVTSLA SGDIHTCNFS WISSHVLEQA
201: WREMAQTLTE ANFGNVKELL EAEPPKWLAD SAASSCMLCG VRFHPIMCSR HHCRFCGGIF CGECSKGRSL LPSKFRVSDP QRVCDVCCVR LDSVQPYLMN
301: HVSNAAQLPT HDLTDLSTLR SWINFPWGQS MEYEIYKATN TIKAYNQIGF LKPEKSIPDA ILRQAKGLAI ITVVKVGVVV TYNIGTGLVV ARREDGSWSP
401: PSAVSTFGVG WGAQAGGELT DFIIVLRTND AVKTFSGNMH LSLGAGLSAA VGIVGRSVEA DVRAGDGGYA ACYTYSCSKG AFVGCSLEGS MVTTRTQENS
501: LFYGSQSITA TDILLGSLPR PPAAAILYRT LVDLYSKFDD

Best Arabidopsis Sequence Match ( AT1G29800.1 )
(BLAST)

001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGSETVR
501: SPAISPLSED

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.