CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016234_P001	Maize	cytosol	84.21	84.05
Zm00001d053541_P002	Maize	cytosol	81.77	83.49
Os02t0233100-01	Rice	cytosol	72.18	71.78
EER89914	Sorghum	cytosol	64.66	64.42
GSMUA_Achr5P06610_001	Banana	cytosol	58.08	64.24
GSMUA_Achr7P13820_001	Banana	cytosol	57.33	58.21
AT1G29800.1	Thale cress	cytosol	54.32	56.67
VIT_19s0014g00860.t01	Wine grape	cytosol	55.08	56.13
VIT_10s0003g01800.t01	Wine grape	cytosol	53.76	54.48
KRH21202	Soybean	cytosol	54.7	53.89
KRH11072	Soybean	cytosol	53.57	52.78
Bra032337.1-P	Field mustard	cytosol	54.14	47.92
CDX99856	Canola	cytosol	54.7	45.97
CDY26313	Canola	cytosol	54.14	45.57
Solyc02g071980.2.1	Tomato	cytosol	55.45	42.75
PGSC0003DMT400073054	Potato	cytosol	55.26	42.61
OQU90261	Sorghum	cytosol	36.84	42.52
OQU77712	Sorghum	cytosol	24.81	40.99
EER96209	Sorghum	cytosol	38.16	40.93

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:8085562	UniProt:C5XYL4	EnsemblPlants:EES04807	ProteinID:EES04807
ProteinID:EES04807.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0032587
GO:GO:0035091	GO:GO:0046872	GO:GO:1900027	InterPro:IPR013083	InterPro:IPR017455	PFAM:PF01363
PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF13	SMART:SM00064	EnsemblPlantsGene:SORBI_3004G102400
SUPFAM:SSF57903	unigene:Sbi.9076	UniParc:UPI0001A8592C	RefSeq:XP_002451831.1	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:9561405..9565849

Molecular Weight (calculated)

57188.8 Da

IEP (calculated)

5.487

GRAVY (calculated)

-0.211

Length

532 amino acids

Sequence
(BLAST)

001: MAGTERPNGP MDPPRPASGR SGGVGAGDSP VRWDDDDYDG GGGRVEGLAG LHIFDQEADE PPVNNDMASS LDTNCIPIAN GFNTETTETS LETEPGKGIN
101: PLHEHTGIWV PVSVPPMTAQ AREEWHRGFG CNGGYFPEEE FGWELDEENY EMTMWDVFAD MVVAAKRKVI SAATYDFGRH GMSVVSNFFL QEAWKDMAQT
201: LADANAGIAN ELLETEPTKW LPDSAATSCM LCGVRFHPIM CSRHHCRFCG GVFCNGCSKG RSLMPPKFMT AEPQRVCDVC GVRLESIQPQ LMNQISRASQ
301: LPTRDVTDLS TLRSWLNFPW AHTMEYEIYK AANSLRSYCK VGGLKPEKAI PDTILRQAKG LAIVTVVKVG MMVTYKLGTG LVVARRVDGS WSPPSAISTC
401: GIGYGAQAGG EIADFIIVLR NTDAIRTFSG KAHLSVGAGV SASAGHVGRA AEADFRAGDG GYAACYTYSC SKGAFVGCAL NGSIVSTRDT ENARFYGGPV
501: KASDILLGSM ARPPAASPLY KALSELFDKI GR

Best Arabidopsis Sequence Match ( AT1G29800.2 )
(BLAST)

001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGR

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.