CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89408
EER95306
EES00126
OQU77594

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	EES00126	AT3G13710.1	21798944
AT3G43230.1	OQU77594	AT3G13710.1	21798944
AT3G43230.1	EER89408	AT4G33350.1	21798944
AT3G43230.1	EER95306	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022148_P001	Maize	cytosol	95.88	95.67
Os07t0616900-01	Rice	cytosol	84.6	84.42
TraesCS2B01G194100.1	Wheat	cytosol	83.3	83.3
TraesCS2D01G175500.1	Wheat	cytosol	82.86	82.86
HORVU2Hr1G030860.2	Barley	cytosol	82.65	82.65
TraesCS2A01G168100.1	Wheat	cytosol	82.43	82.43
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	15.62	72.73
GSMUA_AchrUn_...	Banana	cytosol, extracellular	11.71	71.05
GSMUA_AchrUn_...	Banana	extracellular	10.85	66.67
GSMUA_Achr8P30460_001	Banana	cytosol	65.29	63.91
VIT_11s0016g00400.t01	Wine grape	cytosol	63.12	61.26
Solyc07g017500.2.1	Tomato	cytosol	63.56	60.41
KRH02544	Soybean	cytosol	62.04	59.09
KRH19396	Soybean	cytosol	61.39	58.47
AT3G43230.1	Thale cress	cytosol	61.17	58.14
EER96209	Sorghum	cytosol	60.3	56.05
OQU77712	Sorghum	cytosol	36.44	52.17
PGSC0003DMT400041172	Potato	cytosol	5.64	49.06
CDY30955	Canola	cytosol	57.27	46.23
CDY44837	Canola	cytosol	57.7	44.48
Bra019445.1-P	Field mustard	cytosol	57.7	41.56
EER89914	Sorghum	cytosol	42.73	36.89
EES04807	Sorghum	cytosol	42.52	36.84

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A1W0W7E4	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR013083	InterPro:IPR017455	EnsemblPlants:OQU90261	ProteinID:OQU90261	ProteinID:OQU90261.1	PFAM:PF01363
PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	SMART:SM00064	EnsemblPlantsGene:SORBI_3002G375300
SUPFAM:SSF57903	UniParc:UPI0003C720F5	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:73277660..73281442

Molecular Weight (calculated)

50049.8 Da

IEP (calculated)

7.757

GRAVY (calculated)

-0.150

Length

461 amino acids

Sequence
(BLAST)

001: MGTPNEMMAY SSLSKMDTGQ KGAALSNVVA GNNYPVQDYL YEPAYEPDFP EYDSRDDPFA PTQASPKVNL KTVLGGLVSI VTGVNKSEDD ASQQEGFSTD
101: ISFLGSDKNG DVNVHPSVCV PSAPPLLEAN ALQYSAYREV LLADPPEWLP DSSANACLHC NLPFTALTRG RHHCRFCGGI FCKNCSKGRC LMPMKFRIRD
201: PQRVCDACYE RLDPLQGLLI NYNSNCMQQA KHDVMDWTST RSWLNMPVGV SMEYEIYKAT NTMKKYCQIA RLNPEKSIPS SILKGAKGLA ILTVAKAGAV
301: LTYKVGTGLV VARRSDGSWS APSAILSVGL GWGVQIGGEL TDFIIVLHDR KAVKAFSSRI HLSLGAGLSA AAGPIGRAFE ADVRASDKGS GICYTYSCSK
401: GAFVGVSLEG NVVTTRMETN LRFYGDAYLT ATDILFGRVE RPRAAQPLYS ALDDLFSKMV R

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.