Factsheet for TraesCS2A01G168100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1
TraesCS4A01G050000.1
TraesCS4B01G254700.1
TraesCS4D01G254500.1
TraesCS5A01G072500.1
TraesCS5B01G078500.1
TraesCS5D01G085200.1
TraesCS7A01G171800.1
TraesCS7B01G076600.1
TraesCS7D01G172300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	TraesCS1A01G124100.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS1B01G143000.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS1D01G130300.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS3A01G104300.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS3B01G122600.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS3D01G106500.1	AT3G13710.1	21798944
AT3G43230.1	TraesCS7A01G171800.1	AT4G33350.1	21798944
AT3G43230.1	TraesCS7B01G076600.1	AT4G33350.1	21798944
AT3G43230.1	TraesCS7D01G172300.1	AT4G33350.1	21798944
AT3G43230.1	TraesCS4A01G050000.1	AT4G33920.1	21798944
AT3G43230.1	TraesCS4B01G254700.1	AT4G33920.1	21798944
AT3G43230.1	TraesCS4D01G254500.1	AT4G33920.1	21798944
AT3G43230.1	TraesCS5A01G072500.1	AT4G33920.1	21798944
AT3G43230.1	TraesCS5B01G078500.1	AT4G33920.1	21798944
AT3G43230.1	TraesCS5D01G085200.1	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G194100.1	Wheat	cytosol	97.61	97.61
TraesCS2D01G175500.1	Wheat	cytosol	97.18	97.18
HORVU2Hr1G030860.2	Barley	cytosol	96.96	96.96
Os07t0616900-01	Rice	cytosol	87.42	87.23
OQU90261	Sorghum	cytosol	82.43	82.43
Zm00001d022148_P001	Maize	cytosol	81.78	81.6
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	16.27	75.76
GSMUA_AchrUn_...	Banana	cytosol, extracellular	11.5	69.74
GSMUA_AchrUn_...	Banana	extracellular	10.63	65.33
GSMUA_Achr8P30460_001	Banana	cytosol	64.86	63.48
VIT_11s0016g00400.t01	Wine grape	cytosol	64.64	62.74
Solyc07g017500.2.1	Tomato	cytosol	64.21	61.03
KRH19396	Soybean	cytosol	63.34	60.33
KRH02544	Soybean	cytosol	63.12	60.12
AT3G43230.1	Thale cress	cytosol	61.61	58.56
TraesCS3A01G091400.1	Wheat	cytosol	62.47	58.3
PGSC0003DMT400041172	Potato	cytosol	5.42	47.17
CDY30955	Canola	cytosol	58.35	47.11
CDY44837	Canola	cytosol	59.65	45.99
Bra019445.1-P	Field mustard	cytosol	59.22	42.66
TraesCS7A01G354900.1	Wheat	cytosol	41.87	36.48

Protein Annotations

EnsemblPlants:TraesCS2A01G168100.1	EnsemblPlantsGene:TraesCS2A01G168100	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR013083	InterPro:IPR017455	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178
SEG:seg	SMART:SM00064	SUPFAM:SSF57903	TIGR:cd11526	MapMan:35.2	:

Description

No Description!

Coordinates

chr2A:-:121134593..121138714

Molecular Weight (calculated)

49957.6 Da

IEP (calculated)

7.054

GRAVY (calculated)

-0.119

Length

461 amino acids

Sequence
(BLAST)

001: METPNEVTSY SSLSKIDSYH SQAAPMSDLA PENTYPVYDY LYEPSLEPDF PSEYGSREDP FPTAQASSTI NLKTVLGGLA AIVSRPSKIG DDASRQQSFS
101: MDVSFLGAGK DGDLHSSVCV PSAPPLLEAN ALQFSAYREV LQADPPEWLP DSSTSVCLQC SCPFTALTRG RHHCRFCGGI FCKECSKGRC LMPMKFRLRD
201: PQRVCDACYD RLDPLQALLI NYNSNAMQPA KHDVMDWTST RSWLNLPVGL SMEYEIYKAT NTLRKYCQVS RLNPEKSIPS SILKGAKGLA VLTVAKAGAV
301: LTYKMGTGLV VARRSDGSWS APSAILSVGL GWGVQIGGEL TDFIIVLHDL KAVKAFSSRM HLSLGAGLSA AAGPIGRALE ADVRASEKGS GICYTYSCSK
401: GAFVGVSLEG NVVTTRPDTN LRFYGDAYVT TTDILFGRVE KPRAAQPLYS ALDDLFSKMV C

Best Arabidopsis Sequence Match ( AT1G29800.1 )
(BLAST)

001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGSETVR
501: SPAISPLSED

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.