Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G091300.1 | Wheat | cytosol | 95.55 | 95.16 |
| TraesCS3B01G106600.1 | Wheat | cytosol | 91.9 | 91.53 |
| HORVU3Hr1G016350.1 | Barley | cytosol | 90.69 | 90.87 |
| Os07t0272400-01 | Rice | cytosol | 77.73 | 77.26 |
| EER96209 | Sorghum | cytosol | 76.52 | 76.21 |
| Zm00001d019348_P001 | Maize | cytosol | 76.32 | 76.01 |
| GSMUA_Achr3P10170_001 | Banana | mitochondrion | 60.73 | 71.09 |
| VIT_11s0016g00400.t01 | Wine grape | cytosol | 60.73 | 63.16 |
| OQU77712 | Sorghum | cytosol | 40.89 | 62.73 |
| TraesCS2A01G168100.1 | Wheat | cytosol | 58.3 | 62.47 |
| KRH19396 | Soybean | cytosol | 59.51 | 60.74 |
| KRH02544 | Soybean | cytosol | 59.51 | 60.74 |
| Solyc07g017500.2.1 | Tomato | cytosol | 58.3 | 59.38 |
| AT3G43230.1 | Thale cress | cytosol | 57.69 | 58.76 |
| PGSC0003DMT400041172 | Potato | cytosol | 5.26 | 49.06 |
| CDY30955 | Canola | cytosol | 54.05 | 46.76 |
| CDY44837 | Canola | cytosol | 54.45 | 44.98 |
| Bra019445.1-P | Field mustard | cytosol | 54.45 | 42.03 |
| TraesCS7A01G354900.1 | Wheat | cytosol | 39.47 | 36.86 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G091400.1 | EnsemblPlantsGene:TraesCS3A01G091400 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR013083 | InterPro:IPR017455 | InterPro:Ysc84_actin-binding | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR15629 | PANTHER:PTHR15629:SF25 | PFAM:PF01363 | PFAM:PF04366 | PFscan:PS50178 |
| SEG:seg | SMART:SM00064 | SUPFAM:SSF57903 | TIGR:cd11526 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3A:-:57855927..57858791
Molecular Weight (calculated)
53303.2 Da
IEP (calculated)
6.719
GRAVY (calculated)
-0.181
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTSSEVPFY HSLPVPGAQD SLKDQIHSKV MGTIGNVMNS IDRKALPQQL EGAWETAGNV VNSIESKLSG QKSFDFDGGN DFLDGYECPD DYWDYEQHKA
101: QKPVNIRNLL GGIVAIIGRT CKNDGIQQSK DSSVSFLGSG SDGDTSLHPS VYAPSAPPLL DEEALSYNIY RVVLEAEPPE WLPDSYADSC MQCSASFTAI
201: TRGRHHCRFC GGIFCKACSK GRCLLPAKFR ERNPQRVCDA CYDRLDPLQN LLINSVSNAT QTAKHDVMDW TSARGWLNLP IGLTLEHEIY KAAASLRSYS
301: QVSRINPRKS IPRAVLSGAS GLAILTVVKA GAFLTYKLGT GLVVARKSDG SWSPPSAIAS AGLGWGAQLG GELMDFIIVL HGPEAVKTFS SRMHFSLGAG
401: LSAAAGPVGR VLEADVRAGN KGSGVCYTYS HSKGAFIGVS LEGNIVTTRM DANLRFYGDP YLTTSDILMG NLEQPNAAKF LYQALDDLYS GLDC
101: QKPVNIRNLL GGIVAIIGRT CKNDGIQQSK DSSVSFLGSG SDGDTSLHPS VYAPSAPPLL DEEALSYNIY RVVLEAEPPE WLPDSYADSC MQCSASFTAI
201: TRGRHHCRFC GGIFCKACSK GRCLLPAKFR ERNPQRVCDA CYDRLDPLQN LLINSVSNAT QTAKHDVMDW TSARGWLNLP IGLTLEHEIY KAAASLRSYS
301: QVSRINPRKS IPRAVLSGAS GLAILTVVKA GAFLTYKLGT GLVVARKSDG SWSPPSAIAS AGLGWGAQLG GELMDFIIVL HGPEAVKTFS SRMHFSLGAG
401: LSAAAGPVGR VLEADVRAGN KGSGVCYTYS HSKGAFIGVS LEGNIVTTRM DANLRFYGDP YLTTSDILMG NLEQPNAAKF LYQALDDLYS GLDC
001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
Arabidopsis Description
RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.