Factsheet for PGSC0003DMT400041172

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006409
PGSC0003DMT400013942
PGSC0003DMT400020682
PGSC0003DMT400066175

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	PGSC0003DMT400006409	AT3G13710.1	21798944
AT3G43230.1	PGSC0003DMT400020682	AT4G33350.1	21798944
AT3G43230.1	PGSC0003DMT400013942	AT4G33920.1	21798944
AT3G43230.1	PGSC0003DMT400066175	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g017500.2.1	Tomato	cytosol	98.11	10.72
VIT_11s0016g00400.t01	Wine grape	cytosol	69.81	7.79
GSMUA_Achr3P10170_001	Banana	mitochondrion	52.83	6.64
GSMUA_Achr8P30460_001	Banana	cytosol	56.6	6.37
KRH19396	Soybean	cytosol	56.6	6.2
KRH02544	Soybean	cytosol	56.6	6.2
TraesCS2D01G175500.1	Wheat	cytosol	50.94	5.86
AT3G43230.1	Thale cress	cytosol	52.83	5.77
EER96209	Sorghum	cytosol	52.83	5.65
HORVU2Hr1G030860.2	Barley	cytosol	49.06	5.64
OQU90261	Sorghum	cytosol	49.06	5.64
TraesCS2B01G194100.1	Wheat	cytosol	49.06	5.64
Zm00001d022148_P001	Maize	cytosol	49.06	5.63
HORVU3Hr1G016350.1	Barley	cytosol	50.94	5.48
TraesCS2A01G168100.1	Wheat	cytosol	47.17	5.42
Os07t0616900-01	Rice	cytosol	47.17	5.41
GSMUA_AchrUn_...	Banana	cytosol, extracellular	7.55	5.26
TraesCS3A01G091400.1	Wheat	cytosol	49.06	5.26
Zm00001d019348_P001	Maize	cytosol	49.06	5.24
TraesCS3B01G106600.1	Wheat	cytosol	49.06	5.24
TraesCS3D01G091300.1	Wheat	cytosol	49.06	5.24
CDY30955	Canola	cytosol	54.72	5.08
Os07t0272400-01	Rice	cytosol	47.17	5.03
CDY44837	Canola	cytosol	54.72	4.85
Bra019445.1-P	Field mustard	cytosol	54.72	4.53
PGSC0003DMT400073054	Potato	cytosol	32.08	2.46
GSMUA_AchrUn_...	Banana	extracellular	1.89	1.33
OQU77712	Sorghum	cytosol	5.66	0.93
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400041172	EnsemblPlantsGene:PGSC0003DMG402015931	InterPro:Ysc84_actin-binding	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	PFAM:PF04366
PGSC:PGSC0003DMG402015931	UniParc:UPI000295BB00	UniProt:M1BB13	MapMan:35.2	:	:

Description

Zinc ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402015931]

Coordinates

chr7:+:9891524..9892086

Molecular Weight (calculated)

5934.1 Da

IEP (calculated)

4.220

GRAVY (calculated)

-0.196

Length

53 amino acids

Sequence
(BLAST)

1: MDTNLQFYGD PYLTTADILL GTVDRPKAGE PLYAALKDLY ESFPLRLKGV LND

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.