Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P21800_001 | Banana | extracellular, golgi, plastid | 16.7 | 81.82 |
| VIT_11s0016g00400.t01 | Wine grape | cytosol | 68.66 | 70.11 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular | 10.93 | 69.74 |
| GSMUA_Achr3P10170_001 | Banana | mitochondrion | 60.62 | 69.67 |
| KRH02544 | Soybean | cytosol | 66.6 | 66.74 |
| GSMUA_AchrUn_... | Banana | extracellular | 10.31 | 66.67 |
| KRH19396 | Soybean | cytosol | 66.39 | 66.53 |
| Solyc07g017500.2.1 | Tomato | cytosol | 65.77 | 65.77 |
| Os07t0616900-01 | Rice | cytosol | 59.38 | 62.34 |
| TraesCS2B01G194100.1 | Wheat | cytosol | 58.97 | 62.04 |
| HORVU2Hr1G030860.2 | Barley | cytosol | 58.76 | 61.82 |
| GSMUA_Achr8P30460_001 | Banana | cytosol | 60.0 | 61.78 |
| TraesCS2A01G168100.1 | Wheat | cytosol | 58.56 | 61.61 |
| TraesCS2D01G175500.1 | Wheat | cytosol | 58.56 | 61.61 |
| OQU90261 | Sorghum | cytosol | 58.14 | 61.17 |
| Zm00001d022148_P001 | Maize | cytosol | 57.73 | 60.61 |
| EER96209 | Sorghum | cytosol | 61.44 | 60.08 |
| Zm00001d019348_P001 | Maize | cytosol | 60.82 | 59.48 |
| CDY30955 | Canola | cytosol | 69.48 | 59.02 |
| Os07t0272400-01 | Rice | cytosol | 59.59 | 58.15 |
| HORVU3Hr1G016350.1 | Barley | cytosol | 58.97 | 58.01 |
| OQU77712 | Sorghum | cytosol | 38.35 | 57.76 |
| TraesCS3A01G091400.1 | Wheat | cytosol | 58.76 | 57.69 |
| TraesCS3D01G091300.1 | Wheat | cytosol | 58.76 | 57.46 |
| TraesCS3B01G106600.1 | Wheat | cytosol | 58.35 | 57.06 |
| CDY44837 | Canola | cytosol | 68.45 | 55.52 |
| PGSC0003DMT400041172 | Potato | cytosol | 5.77 | 52.83 |
| Bra019445.1-P | Field mustard | cytosol | 67.42 | 51.09 |
| AT1G29800.1 | Thale cress | cytosol | 41.44 | 39.41 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:823398 | ProteinID:AEE77777.1 | ArrayExpress:AT3G43230 | EnsemblPlantsGene:AT3G43230 |
| RefSeq:AT3G43230 | TAIR:AT3G43230 | RefSeq:AT3G43230-TAIR-G | EnsemblPlants:AT3G43230.1 | TAIR:AT3G43230.1 | EMBL:AY070053 |
| EMBL:AY096434 | Unigene:At.27508 | ProteinID:CAB89044.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0032587 | GO:GO:0035091 | GO:GO:0046872 | GO:GO:1900027 | InterPro:IPR013083 |
| InterPro:IPR017455 | RefSeq:NP_189909.1 | PFAM:PF01363 | PFAM:PF04366 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50178 | PANTHER:PTHR15629 | PANTHER:PTHR15629:SF25 | UniProt:Q9LXL1 |
| SMART:SM00064 | SUPFAM:SSF57903 | UniParc:UPI00000A1EFC | InterPro:Ysc84_actin-binding | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
Coordinates
chr3:+:15207367..15209853
Molecular Weight (calculated)
52437.1 Da
IEP (calculated)
5.514
GRAVY (calculated)
-0.251
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.