Factsheet for GSMUA_Achr3P10170_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P21550_001
GSMUA_Achr3P02220_001
GSMUA_Achr4P14220_001
GSMUA_Achr6P11170_001
GSMUA_Achr6P30510_001
GSMUA_Achr7P09070_001
GSMUA_Achr9P27070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944
AT3G43230.1	GSMUA_Achr6P30510_001	AT4G33350.1	21798944
AT3G43230.1	GSMUA_Achr9P27070_001	AT4G33350.1	21798944
AT3G43230.1	GSMUA_Achr2P21550_001	AT4G33920.1	21798944
AT3G43230.1	GSMUA_Achr3P02220_001	AT4G33920.1	21798944
AT3G43230.1	GSMUA_Achr4P14220_001	AT4G33920.1	21798944
AT3G43230.1	GSMUA_Achr6P11170_001	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, extracellular	13.74	76.32
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	17.54	74.75
GSMUA_AchrUn_...	Banana	extracellular	13.03	73.33
VIT_11s0016g00400.t01	Wine grape	cytosol	76.54	68.0
GSMUA_Achr8P30460_001	Banana	cytosol	70.62	63.27
EER96209	Sorghum	cytosol	72.99	62.1
Solyc07g017500.2.1	Tomato	cytosol	71.09	61.86
Zm00001d019348_P001	Maize	cytosol	72.27	61.49
KRH02544	Soybean	cytosol	70.38	61.36
OQU77712	Sorghum	cytosol	46.68	61.18
TraesCS3A01G091400.1	Wheat	cytosol	71.09	60.73
HORVU3Hr1G016350.1	Barley	cytosol	70.85	60.65
AT3G43230.1	Thale cress	cytosol	69.67	60.62
Os07t0272400-01	Rice	cytosol	71.33	60.56
TraesCS3D01G091300.1	Wheat	cytosol	71.09	60.48
KRH19396	Soybean	cytosol	69.19	60.33
TraesCS3B01G106600.1	Wheat	cytosol	70.62	60.08
PGSC0003DMT400041172	Potato	cytosol	6.64	52.83
CDY30955	Canola	cytosol	66.59	49.21
CDY44837	Canola	cytosol	65.88	46.49
Bra019445.1-P	Field mustard	cytosol	66.11	43.59
GSMUA_Achr5P06610_001	Banana	cytosol	47.16	41.37
GSMUA_Achr7P13820_001	Banana	cytosol	46.92	37.79

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr3G10170_001
EnsemblPlants:GSMUA_Achr3P10170_001	EnsemblPlants:GSMUA_Achr3T10170_001	InterPro:IPR013083	InterPro:IPR017455	UniProt:M0SDD4	PFAM:PF01363
PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	SMART:SM00064	SUPFAM:SSF57903
UniParc:UPI000294EB08	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

FYVE zinc finger domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G10170_001]

Coordinates

chr3:-:7363397..7367371

Molecular Weight (calculated)

45213.6 Da

IEP (calculated)

8.376

GRAVY (calculated)

0.039

Length

422 amino acids

Sequence
(BLAST)

001: MISGLLLTRL ALQHRDAQSK FHSRAQIDVN LKNVLGGIVA ILTGRNKESN GIQPLQSPTS SSLFLGSEDS GGGFLHPSVY IPSAPPFLEA EAINYNAYRA
101: VLEADPPEWL PDSCTAACMQ CASPFTALTR GRHHCRFCGG IFCRACSKGR CLLPVKFRER DPQRVCDACY DKLDPLQGLL INSISNAMQS AKHDVMDWTS
201: SRGWLNLPVG LSMEHEIYKA ANTLKSYSQV ARLNPERSIP LAVLRGAKGL AILTVAKVGA FLTYKLGTGL VVAKRSDGSW SAPSSILSVG LGWGAQIGGE
301: LMDYIIVLHG SKAVKTFCSR MHFSLGAGLS AAAGPVGRVL EADLRAGDKG SGMCYTYSCS KGAFVGVSLE GNLVVTRQDA NTRFYGDPYL TTTDILVGTV
401: EQPKAALPLY AALDDLCSTL QC

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.