Factsheet for AT1G29800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032337.1-P	Field mustard	cytosol	84.9	72.05
CDX99856	Canola	cytosol	85.29	68.72
CDY26313	Canola	cytosol	84.9	68.51
GSMUA_Achr5P06610_001	Banana	cytosol	62.94	66.74
VIT_10s0003g01800.t01	Wine grape	cytosol	67.06	65.14
KRH21202	Soybean	cytosol	65.88	62.22
KRH11072	Soybean	cytosol	65.49	61.85
GSMUA_Achr7P13820_001	Banana	cytosol	62.55	60.88
EES04807	Sorghum	cytosol	56.67	54.32
Zm00001d053541_P002	Maize	cytosol	55.1	53.93
TraesCS7D01G367900.1	Wheat	cytosol	55.69	53.69
Zm00001d016234_P001	Maize	cytosol	56.08	53.66
TraesCS7B01G272800.1	Wheat	cytosol	55.29	53.51
TraesCS7A01G354900.1	Wheat	cytosol	55.1	53.12
Os02t0233100-01	Rice	cytosol	54.9	52.34
EER89914	Sorghum	cytosol	53.53	51.12
Os06t0552400-02	Rice	cytosol	54.71	50.82
Solyc02g071980.2.1	Tomato	cytosol	65.1	48.12
PGSC0003DMT400073054	Potato	cytosol	64.12	47.39
HORVU7Hr1G088960.1	Barley	endoplasmic reticulum	55.29	46.46
AT3G43230.1	Thale cress	cytosol	39.41	41.44
Zm00001d046304_P001	Maize	cytosol, plastid	53.14	38.99

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:839858	ProteinID:AEE31131.1	ArrayExpress:AT1G29800	EnsemblPlantsGene:AT1G29800
RefSeq:AT1G29800	TAIR:AT1G29800	RefSeq:AT1G29800-TAIR-G	EnsemblPlants:AT1G29800.1	TAIR:AT1G29800.1	Unigene:At.40661
EMBL:BT001911	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0032587
GO:GO:0035091	GO:GO:0046872	GO:GO:1900027	InterPro:IPR013083	InterPro:IPR017455	RefSeq:NP_174273.3
PFAM:PF01363	PFAM:PF04366	PO:PO:0000293	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF9
UniProt:Q84WW7	SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI000000BD3C	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW7]

Coordinates

chr1:+:10432599..10435441

Molecular Weight (calculated)

55765.8 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.220

Length

510 amino acids

Sequence
(BLAST)

001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGSETVR
501: SPAISPLSED

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.