Factsheet for Zm00001d046304_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89914	Sorghum	cytosol	68.06	88.58
TraesCS7A01G354900.1	Wheat	cytosol	53.81	70.7
TraesCS7D01G367900.1	Wheat	cytosol	53.81	70.7
TraesCS7B01G272800.1	Wheat	cytosol	53.53	70.59
Os06t0552400-02	Rice	cytosol	52.23	66.12
Zm00001d053541_P002	Maize	cytosol	47.63	63.53
HORVU7Hr1G088960.1	Barley	endoplasmic reticulum	54.53	62.44
GSMUA_Achr5P06610_001	Banana	cytosol	42.01	60.71
Zm00001d016234_P001	Maize	cytosol	46.04	60.04
GSMUA_Achr7P13820_001	Banana	cytosol	42.16	55.92
VIT_19s0014g00860.t01	Wine grape	cytosol	40.29	53.64
KRH21202	Soybean	cytosol	41.3	53.15
AT1G29800.1	Thale cress	cytosol	38.99	53.14
KRH11072	Soybean	cytosol	40.58	52.22
VIT_10s0003g01800.t01	Wine grape	cytosol	38.56	51.05
Bra032337.1-P	Field mustard	cytosol	38.99	45.09
CDY26313	Canola	cytosol	39.42	43.35
CDX99856	Canola	cytosol	38.99	42.81
Zm00001d022148_P001	Maize	cytosol	27.77	41.77
Solyc02g071980.2.1	Tomato	cytosol	40.0	40.29
PGSC0003DMT400073054	Potato	cytosol	40.0	40.29
Zm00001d019348_P001	Maize	cytosol	27.63	38.71

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A1D6P215	ProteinID:AQL04056.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom
InterPro:IPR006121	InterPro:IPR013083	InterPro:IPR017455	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178
PANTHER:PTHR15629	PANTHER:PTHR15629:SF9	SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI000844EA15	InterPro:Ysc84_actin-binding
EnsemblPlantsGene:Zm00001d046304	EnsemblPlants:Zm00001d046304_P001	EnsemblPlants:Zm00001d046304_T001	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING/FYVE/PHD-type zinc finger family protein

Coordinates

chr9:+:79526538..79538933

Molecular Weight (calculated)

76661.9 Da

IEP (calculated)

4.705

GRAVY (calculated)

-0.183

Length

695 amino acids

Sequence
(BLAST)

001: MCELMETELR FMTVNDAEQY TMSSLELLEH SLEEATGSMK VECMQKEPPL IVMVLKVHMH CKAYAEGIWK RILNMKGVQS IELDLKALEV SLMSIKVWRL
101: EAVVAELECR NYELFSEKGE LEKKLVAVEE VIQMVSKEKE GVAKALDVEK RSELEPFTAD MAGTDRLYPE IGTYDLEPPQ VPASAGGSGE EEAGVCDALV
201: MWDDESDACP SHEAAPIIFE KGTRDPPPKV FKEERLDVVH YSEFSDEMAT EKEFGENNYD SFPSCEQTGI IWVPPSVPPM PKHDHDEWQK GFGYNSPCFP
301: EEEYKWDIDE ENLEMTMWDV LSEMVVAGKD KILSIASFDL GMYGTSMISD FCLEETLKDK AQTLKDVSAG SEHALLETEL TKWLPDSAST SCMLCGARFH
401: PIICARHHCR FCGGIFCGGC SKGRSLMPPK FMNSDPQRVC DVCGVRLECI QPYLMNRFSR ACQLPTQDLT DLSTLRSWIN TPWAVRMEYE IYKAANSIHG
501: YCKVGELKPE KSIPDSILRQ AKGLAIITEV KVGVMLTYKI GTGLVVARRG DGSWSPPSAI STCGLGYGVQ AGGELADYII VLRNKDAIKT FSGNAHMSIG
601: AGVSASAGHF GRVAEADFRA GDGGYAACYT YSCSKGAFVG CALNGSVVST RDSVNARFYG GPIKASEILL GSLPKPPAAA TLYKALSVLF DKIEK

Best Arabidopsis Sequence Match ( AT1G29800.1 )
(BLAST)

001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGSETVR
501: SPAISPLSED

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.