Factsheet for VIT_10s0003g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21202	Soybean	cytosol	69.14	67.22
AT1G29800.1	Thale cress	cytosol	65.14	67.06
KRH11072	Soybean	cytosol	68.57	66.67
VIT_19s0014g00860.t01	Wine grape	cytosol	66.1	66.48
GSMUA_Achr5P06610_001	Banana	cytosol	59.81	65.28
GSMUA_Achr7P13820_001	Banana	cytosol	61.33	61.45
Bra032337.1-P	Field mustard	cytosol	64.38	56.24
Zm00001d053541_P002	Maize	cytosol	53.71	54.13
CDX99856	Canola	cytosol	64.95	53.87
EES04807	Sorghum	cytosol	54.48	53.76
CDY26313	Canola	cytosol	64.38	53.48
Zm00001d016234_P001	Maize	cytosol	54.1	53.28
TraesCS7D01G367900.1	Wheat	cytosol	53.14	52.74
TraesCS7B01G272800.1	Wheat	cytosol	52.76	52.56
TraesCS7A01G354900.1	Wheat	cytosol	52.38	51.98
Os02t0233100-01	Rice	cytosol	52.38	51.4
EER89914	Sorghum	cytosol	52.0	51.12
Solyc02g071980.2.1	Tomato	cytosol	66.48	50.58
PGSC0003DMT400073054	Potato	cytosol	65.14	49.57
Os06t0552400-02	Rice	cytosol	51.24	49.0
HORVU7Hr1G088960.1	Barley	endoplasmic reticulum	53.33	46.13
VIT_11s0016g00400.t01	Wine grape	cytosol	39.05	43.16
Zm00001d046304_P001	Maize	cytosol, plastid	51.05	38.56

Protein Annotations

EntrezGene:100241291	wikigene:100241291	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CCB55714	ProteinID:CCB55714.1
UniProt:F6HMC6	EMBL:FN595992	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0032587
GO:GO:0035091	GO:GO:0046872	GO:GO:1900027	InterPro:IPR013083	InterPro:IPR017455	EntrezGene:LOC100241291
wikigene:LOC100241291	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF9
SMART:SM00064	SUPFAM:SSF57903	TIGR:TC64444	UniParc:UPI000198406F	ArrayExpress:VIT_10s0003g01800	EnsemblPlantsGene:VIT_10s0003g01800
EnsemblPlants:VIT_10s0003g01800.t01	unigene:Vvi.18234	RefSeq:XP_002266858	RefSeq:XP_002266858.1	RefSeq:XP_019078201.1	InterPro:Ysc84_actin-binding
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	:	:

Description

No Description!

Coordinates

chr10:-:3253532..3259280

Molecular Weight (calculated)

57464.1 Da

IEP (calculated)

5.473

GRAVY (calculated)

-0.180

Length

525 amino acids

Sequence
(BLAST)

001: MEGERVFSEI QDPEVEPLKS RVSSSHLDCE ELNKQREQSN SPLIVDSVFQ NMSKPGDYDT EFPRGSRLVN AEQLESNADH SMQGKYFYYG SPHYEESGVW
101: IPVSVPPMSE SEHEEWTKGF CSNGGHLTEG DMGWSQFIRE DKELTMWDVV VEMLVLAQGK VSAFASGGTN GCIIPWVSSH LLEQAWNEMA QTLTAANFGK
201: TREILEAEPP RWLADSSAAA CMLCSVRFHP IMCSRHHCRF CGGIFCNECS KGRSLLPAKF RTGDPQRVCD VCFVRLDSVQ SYLMDQVSHA AQLPTHDLTD
301: LSTLRSWVNF PWGQSMEYEI YKATNTIQGY NKVGSLKPEK LIPDAILRQA KGLAILTIVK VGMMVTYRIG TGLVVARKED GSWSPPSAIS SFGVGWGAQV
401: GGELTDFIIV LRTNDAVKTF SGNAHLSVGG GLSAAVGIVG RAVEADVRAG DGGFAACYTY SCSKGAFLGC SIVGSIFTTR KQENSRFYGS QSISASDILL
501: GSLPQPPAAA ILYRALTDLY QKLDG

Best Arabidopsis Sequence Match ( AT1G29800.1 )
(BLAST)

001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGSETVR
501: SPAISPLSED

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.