Factsheet for VIT_19s0014g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P06610_001	Banana	cytosol	62.64	67.98
VIT_10s0003g01800.t01	Wine grape	cytosol	66.48	66.1
GSMUA_Achr7P13820_001	Banana	cytosol	63.41	63.17
EES04807	Sorghum	cytosol	56.13	55.08
Os02t0233100-01	Rice	cytosol	55.94	54.58
TraesCS7D01G367900.1	Wheat	cytosol	55.17	54.44
TraesCS7B01G272800.1	Wheat	cytosol	54.79	54.27
Zm00001d053541_P002	Maize	cytosol	53.83	53.93
Zm00001d016234_P001	Maize	cytosol	54.79	53.66
TraesCS7A01G354900.1	Wheat	cytosol	54.02	53.31
EER89914	Sorghum	cytosol	54.02	52.81
Os06t0552400-02	Rice	cytosol	54.02	51.37
HORVU7Hr1G088960.1	Barley	endoplasmic reticulum	54.79	47.12
VIT_11s0016g00400.t01	Wine grape	cytosol	41.57	45.68
Zm00001d046304_P001	Maize	cytosol, plastid	53.64	40.29

Protein Annotations

EntrezGene:100246883	wikigene:100246883	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CBI20157	ProteinID:CBI20157.3
UniProt:E0CS58	EMBL:FN595229	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0032587	GO:GO:0035091	GO:GO:0046872	GO:GO:1900027	InterPro:IPR013083	InterPro:IPR017455
EntrezGene:LOC100246883	wikigene:LOC100246883	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629
PANTHER:PTHR15629:SF15	SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI00019856DF	ArrayExpress:VIT_19s0014g00860	EnsemblPlantsGene:VIT_19s0014g00860
EnsemblPlants:VIT_19s0014g00860.t01	unigene:Vvi.894	RefSeq:XP_002285551	RefSeq:XP_002285551.1	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

No Description!

Coordinates

chr19:+:884763..893585

Molecular Weight (calculated)

57226.1 Da

IEP (calculated)

5.518

GRAVY (calculated)

-0.221

Length

522 amino acids

Sequence
(BLAST)

001: MEPNTLYRNL RFDDYPPDDL ISDKASGEVQ ELREGSEPML TDNCVKHEKI QLRDCESKSP KSTGVDNDVL NDSFVGHKKP GKYFYYDLPL SEETGPWIPV
101: SVPPMLEGEN EEWSKALGVN GGYLPDGDMG WNQLIGEDKE LTMWDVVTDM LLAAQGKVNA IASGDIHRCR VSWISNHLLE QAWKEMAETL TEVNLSNIKE
201: IIEADPPKWL PDSAASACML CNVRFHPIMC SRHHCRFCGG IFCNECSKGR SLLPIKFRSG NPQRVCDVCC VRLESVQSYL MDQVSRAAQS PTYDLTDLST
301: LRSWLNFPWG QSMEYEIYKA ANTIRGYNKV GSLTPEKSIP EAILKQAKGL AILTVAKVGV MVTYNIGTGL VIARREDGSW SPPSAISSFG IGWGAQAGGE
401: LTDFIIVLRT NNAVKTFSGN MHFSVGAGLS AAVGIAGRSA EADVRAGDGG YAACYTYSCC KGAFVGCSLK GNIVTTRSQE NCRFYGNPSI SASDILLGSL
501: PRPPAAATLY HALSDLFLKF ER

Best Arabidopsis Sequence Match ( AT1G29800.2 )
(BLAST)

001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGR

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.