CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21202	Soybean	cytosol	88.7	88.7
VIT_10s0003g01800.t01	Wine grape	cytosol	66.67	68.57
AT1G29800.1	Thale cress	cytosol	61.85	65.49
GSMUA_Achr5P06610_001	Banana	cytosol	57.22	64.24
GSMUA_Achr7P13820_001	Banana	cytosol	59.44	61.26
Bra032337.1-P	Field mustard	cytosol	61.3	55.07
TraesCS7D01G367900.1	Wheat	cytosol	53.7	54.82
TraesCS7B01G272800.1	Wheat	cytosol	53.33	54.65
TraesCS7A01G354900.1	Wheat	cytosol	52.96	54.06
Os02t0233100-01	Rice	cytosol	53.52	54.02
Zm00001d053541_P002	Maize	cytosol	51.85	53.74
EES04807	Sorghum	cytosol	52.78	53.57
CDX99856	Canola	cytosol	62.41	53.24
EER89914	Sorghum	cytosol	52.04	52.62
Zm00001d016234_P001	Maize	cytosol	51.85	52.53
CDY26313	Canola	cytosol	61.3	52.37
Os06t0552400-02	Rice	cytosol	52.59	51.73
Solyc02g071980.2.1	Tomato	cytosol	63.52	49.71
PGSC0003DMT400073054	Potato	cytosol	63.33	49.57
HORVU7Hr1G088960.1	Barley	endoplasmic reticulum	53.7	47.78
KRH02544	Soybean	cytosol	39.07	43.59
KRH19396	Soybean	cytosol	38.7	43.18
Zm00001d046304_P001	Maize	cytosol, plastid	52.22	40.58

Protein Annotations

EntrezGene:100785341	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02009175	EnsemblPlantsGene:GLYMA_15G086900	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0032587	GO:GO:0035091	GO:GO:0046872
GO:GO:1900027	UniProt:I1MEW4	InterPro:IPR013083	InterPro:IPR017455	EnsemblPlants:KRH11072	ProteinID:KRH11072
ProteinID:KRH11072.1	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF9
SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI000233AFF4	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:6659448..6663820

Molecular Weight (calculated)

59431.3 Da

IEP (calculated)

5.234

GRAVY (calculated)

-0.232

Length

540 amino acids

Sequence
(BLAST)

001: MEGKILDSRN QAQVVENLSA RVSSCSLGDK ISYSDSPLDD EVVGMRKNSV TKEYCDSFST DSTEGHCINS SRLYPELPEK QMEKNNEDME SSANLQKRGR
101: YFYYDTPLHE DTGVWIPVSV PPMLEDDHKE WTKGFHSNGG YFPDDDMGWN QYVGDERELT MWDVLAEMLL VARGKVTSLA LGDIHTCNFS WISSHVLEQA
201: WREMAQTLTE ANFGNVKELL EAEPPKWLAD SAAASCMLCG VRFHPIMCSR HHCRFCGGIF CGECSKGRSL LPSKFQVSDP QRVCDVCCVR LDSVQPYLMD
301: HVSNAAQLPT HDLTDLSTLR SWINFPWGQS MEYEIYKATN TIKAYNQIGF LKLEKSIPDA ILRQAKGLAI ITVVKVGVGV TYNIGTGLVV ARREDGSWSP
401: PSAVSTFGVG WGAQAGGELT DFIIVLRTND AVKTFGGNMH LSLGAGLSAA VGFVGRSVKA DVRAGDGGYA ACYTYNCSKG AFVGCSLEGS MVTTRTQENS
501: RFYGSQSITA TDILFGSLPR PPAAAILYRA LADLYSKFDD

Best Arabidopsis Sequence Match ( AT1G29800.1 )
(BLAST)

001: MDERDREIRA SHGDSNAGNV VSQSIENTRE EDSGSCEGFV EESKRLEPEQ QKHGKYFFYD TPLSEETGVW IPVSVPPMLE PDHEEWSRGL SFNGGYFPEG
101: DMGWDQIFDE DKELTMWDVI VDMLLAARGK ASALSSGNLE RCGINFLSGH LLEQAWQDMA HTLTEANFGN AREILETEPP KWLPDSAASA CMLCSVRFHP
201: IMCSRHHCRY CGGIFCRDCS KGKSLVPVKF RVSDPQRVCD VCFVRLESVQ PYLMDQVSPA AQLPTHDLTD LSTLRSWVNF PWGQSMEYEI YKATNTLRGY
301: ITKVGSSRTE RSIPDAILRQ AKGLAVITVA RVGVMVTYKI GTGLVVARRD DGSWSPPSAI SSFGLGWGAQ AGGEFIDFII VLRTREAIQT FGSNTHLVVG
401: AGLSAAVGVT GRAVEADIRA GSGGYAACYT YSCSKGAFVG CSLEGSIFTT RTSENSRFYG SQSLAASDIL LGSLPRPPAA AALYRALGDL YQKMGSETVR
501: SPAISPLSED

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84WW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.