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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
TargetP:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G009550.1
HORVU1Hr1G028520.1
HORVU1Hr1G038060.9
HORVU1Hr1G085940.2
HORVU2Hr1G007080.13
HORVU2Hr1G060900.13
HORVU2Hr1G079080.2
HORVU2Hr1G098080.1
HORVU3Hr1G018940.2
HORVU3Hr1G035000.2
HORVU3Hr1G045150.3
HORVU3Hr1G070650.1
HORVU4Hr1G002870.1
HORVU4Hr1G032500.2
HORVU5Hr1G031300.2
HORVU5Hr1G053680.2
HORVU5Hr1G073450.4
HORVU5Hr1G103320.2
HORVU6Hr1G012290.5
HORVU6Hr1G062800.5
HORVU6Hr1G073370.2
HORVU7Hr1G002080.2
HORVU7Hr1G072940.6
HORVU7Hr1G080190.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G55190.1 HORVU2Hr1G007080.13 AT1G71480.1 21798944
AT1G55190.1 HORVU4Hr1G032500.2 AT1G71480.1 21798944
AT1G55190.1 HORVU5Hr1G103320.2 AT2G34690.1 18845362
AT1G55190.1 HORVU7Hr1G002080.2 AT4G25680.1 21798944
AT1G55190.1 HORVU5Hr1G073450.4 AT5G10730.1 21798944
AT1G55190.1 HORVU6Hr1G062800.5 AT5G51180.1 21798944
AT1G55190.1 HORVU7Hr1G072940.6 AT5G51180.1 21798944
AT3G13710.1 HORVU3Hr1G035000.2 AT1G09180.1 21798944
AT3G13710.1 HORVU3Hr1G045150.3 AT1G09180.1 21798944
AT3G13710.1 HORVU7Hr1G080190.1 AT1G09180.1 21798944
AT3G13710.1 HORVU1Hr1G038060.9 AT3G53180.1 21798944
AT3G13710.1 HORVU6Hr1G012290.5 AT3G53180.1 21798944
AT3G13710.1 HORVU3Hr1G035000.2 AT4G02080.1 21798944
AT3G13710.1 HORVU3Hr1G045150.3 AT4G02080.1 21798944
AT3G13710.1 HORVU7Hr1G080190.1 AT4G02080.1 21798944
AT3G13720.1 HORVU1Hr1G028520.1 AT1G55190.1 21798944
AT3G13720.1 HORVU3Hr1G018940.2 AT1G55190.1 21798944
AT3G13720.1 HORVU2Hr1G007080.13 AT1G71480.1 21798944
AT3G13720.1 HORVU4Hr1G032500.2 AT1G71480.1 21798944
AT3G13720.1 HORVU2Hr1G060900.13 AT2G30880.1 21798944
AT3G13720.1 HORVU4Hr1G002870.1 AT2G30880.1 21798944
AT3G13720.1 HORVU5Hr1G103320.2 AT2G34690.1 18845362
AT3G13720.1 HORVU1Hr1G028520.1 AT3G13720.1 21798944
AT3G13720.1 HORVU3Hr1G018940.2 AT3G13720.1 21798944
AT3G13720.1 HORVU5Hr1G031300.2 AT3G50110.1 21798944
AT3G13720.1 HORVU0Hr1G009550.1 AT4G17486.1 21798944
AT3G13720.1 HORVU2Hr1G098080.1 AT4G17486.1 21798944
AT3G13720.1 HORVU7Hr1G002080.2 AT4G25660.1 21798944
AT3G13720.1 HORVU7Hr1G002080.2 AT4G25680.1 21798944
AT3G13720.1 HORVU1Hr1G085940.2 AT5G09450.1 21798944
AT3G13720.1 HORVU2Hr1G079080.2 AT5G09450.1 21798944
AT3G13720.1 HORVU3Hr1G070650.1 AT5G09450.1 21798944
AT3G13720.1 HORVU6Hr1G073370.2 AT5G37680.1 21798944
AT3G13720.1 HORVU0Hr1G009550.1 AT5G47310.1 21798944
AT3G13720.1 HORVU2Hr1G098080.1 AT5G47310.1 21798944
AT3G13720.1 HORVU5Hr1G053680.2 AT5G55200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G122600.1 Wheat plastid 72.16 96.84
TraesCS3D01G106500.1 Wheat plastid 72.16 96.84
TraesCS3A01G104300.1 Wheat plastid 72.16 96.34
Zm00001d039455_P002 Maize extracellular, mitochondrion 64.71 85.49
EES00126 Sorghum plastid 63.53 84.38
Os01t0196500-01 Rice plastid 64.31 81.59
HORVU1Hr1G028520.1 Barley plastid 58.82 69.44
GSMUA_Achr7P09070_001 Banana plastid 49.02 66.49
KRH23330 Soybean plastid 42.35 58.7
KRH10001 Soybean mitochondrion 41.57 57.61
PGSC0003DMT400006409 Potato plasma membrane 39.22 54.95
Solyc03g121460.1.1 Tomato plastid 38.82 54.4
VIT_09s0002g02400.t01 Wine grape plastid 40.0 52.85
KRH44167 Soybean plasma membrane 34.51 50.0
AT3G13720.1 Thale cress cytosol, plasma membrane, plastid 36.47 49.47
KRH47141 Soybean plasma membrane 34.51 49.44
CDX97509 Canola plasma membrane 34.9 49.17
CDY23634 Canola plasma membrane 34.9 49.17
Bra027406.1-P Field mustard plasma membrane 34.51 48.62
VIT_11s0016g02330.t01 Wine grape plastid 34.51 46.56
AT1G55190.1 Thale cress plasma membrane 34.51 46.56
AT3G13710.1 Thale cress plasma membrane 32.94 44.68
Bra021504.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 31.76 44.51
CDY51735 Canola plasma membrane 31.76 44.51
CDY37483 Canola plasma membrane 31.37 43.96
CDY33064 Canola cytosol, plasma membrane, plastid 32.16 43.85
CDY26125 Canola cytosol, plasma membrane, plastid 32.16 43.39
CDY24050 Canola cytosol, plasma membrane, plastid 31.76 43.32
Bra014355.1-P Field mustard cytosol, plasma membrane, plastid 31.76 42.86
CDY08228 Canola plasma membrane 31.76 42.86
Bra037983.1-P Field mustard extracellular, plasma membrane 23.14 42.14
Bra031001.1-P Field mustard plasma membrane 29.02 40.88
AT1G17700.1 Thale cress plasma membrane 28.63 40.56
CDX81845 Canola plasma membrane 28.63 40.33
Bra025954.1-P Field mustard plasma membrane 27.84 38.59
CDY26225 Canola plasma membrane 27.45 38.04
CDY06788 Canola plastid 28.24 37.11
CDY59501 Canola plasma membrane 26.67 36.96
KRH49060 Soybean plasma membrane 28.63 36.87
KRH74153 Soybean endoplasmic reticulum, peroxisome, plasma membrane 28.63 36.5
AT4G29658.2 Thale cress plastid 26.27 35.26
Bra011125.1-P Field mustard mitochondrion 23.92 34.86
CDY43514 Canola mitochondrion 23.53 34.29
HORVU3Hr1G088130.1 Barley plastid 27.45 31.82
CDY37482 Canola plastid 25.88 31.58
Bra021503.1-P Field mustard plastid 25.1 30.77
CDY51734 Canola plastid 25.1 30.62
HORVU1Hr1G070360.1 Barley plastid 24.71 28.38
HORVU4Hr1G024530.1 Barley plastid 25.1 28.32
HORVU5Hr1G106520.1 Barley cytosol 25.1 27.35
CDY55133 Canola plasma membrane 21.57 25.82
CDY51733 Canola plastid 20.78 24.77
Bra021502.1-P Field mustard plastid 20.78 24.77
HORVU2Hr1G086930.1 Barley cytosol, plastid 10.59 24.11
HORVU0Hr1G013770.1 Barley mitochondrion 30.2 23.99
HORVU5Hr1G047520.1 Barley endoplasmic reticulum, plastid 21.18 22.31
Protein Annotations
EnsemblPlants:HORVU3Hr1G018940.2EnsemblPlantsGene:HORVU3Hr1G018940GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR19317PANTHER:PTHR19317:SF10PFAM:PF03208SEG:segTMHMM:TMhelixUniParc:UPI000B47B857
UniProt:A0A287KBB6MapMan:22.8.4.3.2::::
Description
PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A287KBB6]
Coordinates
chrchr3H:-:50201168..50204360
Molecular Weight (calculated)
27253.5 Da
IEP (calculated)
10.333
GRAVY (calculated)
0.488
Length
255 amino acids
Sequence
(BLAST)
001: HVVLREGIQH GSVPHPRVAS QFVNPIAFPD PSRVSSPPLP RPLPPSSSRI RHPAARPSPP ATMSKYGTIP TSSSSAAGAA HLGGASPLDF ISRAKARGAT
101: ALATRRPWRE LADVHAIGLP PSLGDAYLRV RANLAHFAMN YAIVVLVVVF LSLLWQPISL IVFLVCMVGW LVLYFLRDEP VVLFGRVVGD GVVLAVLAVV
201: TLILLLLTGA TTNILTSLLI GFVLVVVHAA LHKAEDNVDD EVGRWYAPVP AQPSH
Best Arabidopsis Sequence Match ( AT3G13720.1 )
(BLAST)
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
Arabidopsis Description
PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.