Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 2
- mitochondrion 2
- plastid 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G115210.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51180.1 | HORVU2Hr1G115210.1 | AT1G14340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G280500.1 | Wheat | cytoskeleton, cytosol, nucleus | 93.0 | 93.79 |
| TraesCS6D01G226000.1 | Wheat | cytosol | 92.16 | 93.47 |
| TraesCS6A01G243800.1 | Wheat | cytosol | 91.6 | 93.43 |
| EES05791 | Sorghum | cytosol | 77.87 | 80.58 |
| Zm00001d017470_P001 | Maize | cytosol | 79.55 | 79.78 |
| GSMUA_Achr5P15490_001 | Banana | cytosol | 61.9 | 68.63 |
| CDY05841 | Canola | cytosol | 58.26 | 61.36 |
| Bra035731.1-P | Field mustard | cytosol | 58.26 | 60.82 |
| PGSC0003DMT400069125 | Potato | cytosol | 61.34 | 60.16 |
| Solyc03g093510.2.1 | Tomato | nucleus | 60.22 | 59.56 |
| CDX71694 | Canola | cytosol | 58.82 | 59.49 |
| VIT_16s0013g01410.t01 | Wine grape | cytosol | 57.7 | 59.2 |
| PGSC0003DMT400027928 | Potato | nucleus | 59.66 | 59.17 |
| Solyc05g052020.2.1 | Tomato | cytosol | 60.22 | 59.07 |
| KRG90131 | Soybean | cytosol | 58.54 | 58.71 |
| AT5G51180.1 | Thale cress | cytoskeleton, cytosol, nucleus | 58.54 | 58.54 |
| KRH33381 | Soybean | cytosol | 58.26 | 58.26 |
| Os02t0655600-01 | Rice | cytosol | 20.73 | 53.62 |
| HORVU7Hr1G072940.6 | Barley | plastid | 53.5 | 47.87 |
| HORVU7Hr1G060790.8 | Barley | plastid | 47.9 | 39.58 |
| HORVU4Hr1G009670.6 | Barley | cytosol | 44.26 | 38.35 |
| HORVU7Hr1G023560.21 | Barley | nucleus | 41.18 | 28.05 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G062800.5 | EnsemblPlantsGene:HORVU6Hr1G062800 | Gene3D:3.40.50.1820 | InterPro:AB_hydrolase | InterPro:DUF676_lipase-like | InterPro:IPR029058 |
| PANTHER:PTHR12482 | PANTHER:PTHR12482:SF37 | PFAM:PF05057 | SEG:seg | SUPFAM:SSF53474 | UniParc:UPI0002967E9F |
| UniProt:M0V0M0 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:420154075..420158366
Molecular Weight (calculated)
39424.1 Da
IEP (calculated)
6.555
GRAVY (calculated)
-0.211
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDLEDGDCR EAAAAPEEEA AAPEPEPAVG GADHLVIMVH GIVGSTADWK FGAEQFHKLL EGRVIVHCSS SNMHKLTLDG IDVMGERLAQ EVIEEINKRP
101: QITKISFVAH SVGGLVARYA IGRLYRPPRQ ALANCPQSLR DSNRGNIHGL EAVNFITVAS PHLGSRGNKQ VPFLFGVTAI EKFACCIIHL IFRRTGKHLF
201: LTDNDDGKPP LLQCMVDDSG DLRFISALQA FQRRVAYSNV GYDHIVGWRT SSIRGASELP KWVDSTSKIY PHIVYEELSK AESLDQCADV ADMDKDNCTL
301: EERLLRGLKR VSWEKVDVSF HNSKARSAAH SVIQVKDPVM HSEGADVIKH MIDHFVA
101: QITKISFVAH SVGGLVARYA IGRLYRPPRQ ALANCPQSLR DSNRGNIHGL EAVNFITVAS PHLGSRGNKQ VPFLFGVTAI EKFACCIIHL IFRRTGKHLF
201: LTDNDDGKPP LLQCMVDDSG DLRFISALQA FQRRVAYSNV GYDHIVGWRT SSIRGASELP KWVDSTSKIY PHIVYEELSK AESLDQCADV ADMDKDNCTL
301: EERLLRGLKR VSWEKVDVSF HNSKARSAAH SVIQVKDPVM HSEGADVIKH MIDHFVA
001: MEKHEEENGL CKAESVDGSL DVWSCQNSDS SSADHLVVMV HGILGSTDDW KFGAEQFVKK MPDKVFVHCS EKNVSALTLD GVDVMGERLA AEVLDIIQRK
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
Arabidopsis Description
AT5G51180 protein [Source:UniProtKB/TrEMBL;Acc:Q949V0]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.