Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g007200.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51180.1 | Solyc05g007200.2.1 | AT1G14340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069125 | Potato | cytosol | 95.33 | 95.33 |
| Solyc03g093510.2.1 | Tomato | nucleus | 75.55 | 76.18 |
| VIT_16s0013g01410.t01 | Wine grape | cytosol | 68.68 | 71.84 |
| KRG90131 | Soybean | cytosol | 67.86 | 69.38 |
| KRH33381 | Soybean | cytosol | 67.31 | 68.63 |
| CDY05841 | Canola | cytosol | 62.64 | 67.26 |
| Bra035731.1-P | Field mustard | cytosol | 62.64 | 66.67 |
| GSMUA_Achr7P06920_001 | Banana | cytosol | 59.07 | 66.56 |
| CDX71694 | Canola | cytosol | 64.01 | 66.01 |
| AT5G51180.1 | Thale cress | cytoskeleton, cytosol, nucleus | 64.29 | 65.55 |
| GSMUA_Achr5P15490_001 | Banana | cytosol | 57.97 | 65.53 |
| GSMUA_Achr4P28970_001 | Banana | cytosol | 64.01 | 65.45 |
| EES05791 | Sorghum | cytosol | 60.16 | 63.48 |
| GSMUA_Achr2P12000_001 | Banana | cytosol | 59.62 | 63.08 |
| TraesCS7D01G302900.1 | Wheat | cytoskeleton, cytosol, nucleus | 59.89 | 61.93 |
| Zm00001d017470_P001 | Maize | cytosol | 60.44 | 61.8 |
| TraesCS7A01G306200.1 | Wheat | cytosol | 59.62 | 61.47 |
| TraesCS7B01G206400.1 | Wheat | cytosol | 59.34 | 61.19 |
| TraesCS6D01G226000.1 | Wheat | cytosol | 58.52 | 60.51 |
| TraesCS6A01G243800.1 | Wheat | cytosol | 57.97 | 60.29 |
| HORVU6Hr1G062800.5 | Barley | cytosol | 59.07 | 60.22 |
| OQU79861 | Sorghum | cytosol | 58.52 | 60.17 |
| TraesCS6B01G280500.1 | Wheat | cytoskeleton, cytosol, nucleus | 58.24 | 59.89 |
| Os08t0143700-01 | Rice | cytoskeleton, cytosol, nucleus | 56.87 | 59.14 |
| Zm00001d024645_P001 | Maize | cytosol | 56.87 | 53.77 |
| HORVU7Hr1G072940.6 | Barley | plastid | 55.49 | 50.63 |
| Os02t0655600-01 | Rice | cytosol | 17.03 | 44.93 |
| Solyc07g006690.2.1 | Tomato | plastid | 52.2 | 43.18 |
| Solyc04g077180.1.1 | Tomato | nucleus | 44.78 | 41.79 |
| Solyc11g020720.1.1 | Tomato | cytosol | 17.58 | 36.78 |
| Solyc02g076870.2.1 | Tomato | plastid | 40.66 | 32.67 |
Protein Annotations
| EnsemblPlants:Solyc05g052020.2.1 | EnsemblPlantsGene:Solyc05g052020.2 | Gene3D:3.40.50.1820 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0044255 | GO:GO:0052689 |
| InterPro:AB_hydrolase | InterPro:DUF676_lipase-like | InterPro:IPR029058 | PANTHER:PTHR12482 | PANTHER:PTHR12482:SF14 | PFAM:PF05057 |
| SEG:seg | SUPFAM:SSF53474 | UniParc:UPI0002765B05 | UniProt:K4C1N3 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5:+:62359024..62367145
Molecular Weight (calculated)
40971.8 Da
IEP (calculated)
6.748
GRAVY (calculated)
-0.338
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNGEVVNGR GGVCSSETVN GGEDVFSCEK TDASSADHLV IMVHGILGST TDWKFGAEQF VRRFPDKVFV HCSERNIGKL TLDGVDVMGE RLSEEVLEVI
101: KRKPGLKKIS FVSHSVGGLV ARYAIGRLYR PRRIENTEDL SANACVEGLE DCTIAGLEPV NFITVATPHL GSRGNKQVPF LFGVTALEKA AFHVIHLIFK
201: RTGRHLFLCD NDEGRPPLLK RMVEDKGELQ FLSALRSFKR RVAYSNVGYD HVVGWRTSSI RRNNELPKWE DSFNEKYPHI VYEEHCKACE GEQGESVVKE
301: DDSLDKLEEE LVTGLSRVSW DKVDVSFHRI RRRFASHTVI QVKDQKIDAE GADVIQHMID NFIV
101: KRKPGLKKIS FVSHSVGGLV ARYAIGRLYR PRRIENTEDL SANACVEGLE DCTIAGLEPV NFITVATPHL GSRGNKQVPF LFGVTALEKA AFHVIHLIFK
201: RTGRHLFLCD NDEGRPPLLK RMVEDKGELQ FLSALRSFKR RVAYSNVGYD HVVGWRTSSI RRNNELPKWE DSFNEKYPHI VYEEHCKACE GEQGESVVKE
301: DDSLDKLEEE LVTGLSRVSW DKVDVSFHRI RRRFASHTVI QVKDQKIDAE GADVIQHMID NFIV
001: MEKHEEENGL CKAESVDGSL DVWSCQNSDS SSADHLVVMV HGILGSTDDW KFGAEQFVKK MPDKVFVHCS EKNVSALTLD GVDVMGERLA AEVLDIIQRK
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
Arabidopsis Description
AT5G51180 protein [Source:UniProtKB/TrEMBL;Acc:Q949V0]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.