Factsheet for Solyc02g076870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026437	Potato	cytosol	36.64	88.3
Solyc11g020720.1.1	Tomato	cytosol	31.13	81.03
VIT_10s0003g01230.t01	Wine grape	cytosol	61.81	75.88
KRH42854	Soybean	plastid	68.21	68.51
CDY15650	Canola	cytosol	39.29	68.46
Zm00001d045311_P015	Maize	golgi, mitochondrion	44.15	66.89
CDX90168	Canola	plastid	63.36	64.49
Bra010851.1-P	Field mustard	plastid	63.36	64.49
CDY43318	Canola	plastid	63.36	64.35
AT1G29120.8	Thale cress	plastid	64.68	64.25
TraesCS7D01G105700.1	Wheat	plastid	56.07	58.93
KXG19329	Sorghum	plastid	57.17	58.47
TraesCS7A01G110400.1	Wheat	plastid	55.63	58.33
TraesCS7B01G008200.1	Wheat	plastid	55.41	58.24
KRH58952	Soybean	plastid	65.34	58.04
GSMUA_Achr10P...	Banana	cytosol	53.86	57.55
Os06t0154400-01	Rice	cytosol, nucleus, plastid	22.08	51.81
HORVU7Hr1G023560.21	Barley	nucleus	55.63	48.09
Solyc03g093510.2.1	Tomato	nucleus	32.45	40.72
Solyc05g052020.2.1	Tomato	cytosol	32.67	40.66
Solyc04g077180.1.1	Tomato	nucleus	32.45	37.69
Solyc07g006690.2.1	Tomato	plastid	35.54	36.59

Protein Annotations

EnsemblPlants:Solyc02g076870.2.1	EnsemblPlantsGene:Solyc02g076870.2	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0044255	GO:GO:0052689
InterPro:AB_hydrolase	InterPro:DUF676_lipase-like	InterPro:IPR029058	PANTHER:PTHR12482	PANTHER:PTHR12482:SF11	PFAM:PF05057
SEG:seg	SUPFAM:SSF53474	UniParc:UPI0002767943	UniProt:K4B8R4	MapMan:35.2	:

Description

No Description!

Coordinates

chr2:+:41983283..41994655

Molecular Weight (calculated)

49954.5 Da

IEP (calculated)

8.614

GRAVY (calculated)

-0.201

Length

453 amino acids

Sequence
(BLAST)

001: MASSATVLHH YSPRPSFSTN SSSSSSSSPS SSSSSSSFDQ RRCFNWKFLC FSGINNICRS QSFRAHAMST TEGGVMSPKV LMDTGDEPEH LLVLVHGILA
101: SPSDWTYVQA ELRRRLGRNF LIYASSCNTF TKTFTGIDGA GKRLADEVRL VVKKKESLKK ISFLAHSLGG LIARYALGVL YSSDNCNEQY NDAVTSTSAN
201: LKPVCSSNVG LIAGLEPVNF ITLATPHLGV RGKNQLPFLF GLPILEKLAA PIAPIFVGQT GSQLFLTDGK PTKPPLLLRM ASDCDDGKFI SALGSFKWRV
301: LYANVSYDHM VGWRTSSIRR VTELVKPPWR SLDGYKHVVD VEYCPPASCE GPHYPLEAAK AKEAAQNAPN TQRTLEYHES MEEEMIRGLQ QLGWKKIDVS
401: FHSAFWPFFA HNNIHVKNEF FHNAGVGVIA HVADHIKQQE MQSESTSLIT PSL

Best Arabidopsis Sequence Match ( AT1G29120.8 )
(BLAST)

001: MSTASSWIQQ PPFRYLPDRG GFSKPSSRSA RQFSSGVVSA SASSPSPSSS CSCGYSEILN FDFEGSNRSW NQQGRRVQAM SSTAQRKFSL SKGDSDDKNE
101: PDHLLVLVHG ILASPSDWLY VEAELKRRLG RRFLIYASSS NTFTKTFGGI DGAGKRLAEE VRQVVQKSKS LKKISFLAHS LGGLFSRHAV AVLYSAAMAQ
201: VSDVAVSQSG NSNLLRGRIA GLEPINFITL ATPHLGVRGR KQLPFLLGVP ILEKLAAPIA PFFVGRTGSQ LFLTDGKADK PPLLLRMASD GEDLKFLSAL
301: GAFRSRIIYA NVSYDHMVGW RTSSIRRETE LIKPSRRSLD GYKHVVDVEY CPPVSSDGAH FPPEAAKAKE AAQSSPSPQN TLEYHEIVEE EMIRGLQRLG
401: WKKVDVSFHS TFWPYLAHNN IHVKSERLYK AGAGVIAHVA DSIKQQESST FITASL

Arabidopsis Description

AT1G29120 protein [Source:UniProtKB/TrEMBL;Acc:C0Z2A9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.