Factsheet for VIT_10s0003g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15650	Canola	cytosol	49.86	70.77
KRH42854	Soybean	plastid	83.47	68.29
Zm00001d045311_P015	Maize	golgi, mitochondrion	53.93	66.56
CDY43318	Canola	plastid	76.69	63.45
AT1G29120.8	Thale cress	plastid	78.05	63.16
Bra010851.1-P	Field mustard	plastid	76.15	63.15
CDX90168	Canola	plastid	76.15	63.15
Solyc02g076870.2.1	Tomato	plastid	75.88	61.81
KRH58952	Soybean	plastid	82.11	59.41
GSMUA_Achr10P...	Banana	cytosol	67.75	58.96
PGSC0003DMT400026437	Potato	cytosol	29.54	57.98
KXG19329	Sorghum	plastid	69.11	57.56
TraesCS7B01G008200.1	Wheat	plastid	66.12	56.61
TraesCS7D01G105700.1	Wheat	plastid	65.58	56.15
TraesCS7A01G110400.1	Wheat	plastid	65.31	55.79
Os06t0154400-01	Rice	cytosol, nucleus, plastid	28.18	53.89
HORVU7Hr1G023560.21	Barley	nucleus	65.85	46.37
VIT_16s0013g01410.t01	Wine grape	cytosol	36.59	38.79
VIT_11s0052g01660.t01	Wine grape	plastid	40.11	36.72
VIT_18s0001g08360.t01	Wine grape	nucleus	37.4	33.82

Protein Annotations

EntrezGene:100266871	wikigene:100266871	Gene3D:3.40.50.1820	MapMan:35.2	InterPro:AB_hydrolase	ProteinID:CCB55682
ProteinID:CCB55682.1	InterPro:DUF676_lipase-like	UniProt:F6HM94	EMBL:FN595992	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0044255
GO:GO:0052689	InterPro:IPR029058	EntrezGene:LOC100266871	wikigene:LOC100266871	PFAM:PF05057	PANTHER:PTHR12482
PANTHER:PTHR12482:SF11	SUPFAM:SSF53474	UniParc:UPI0002107FB7	ArrayExpress:VIT_10s0003g01230	EnsemblPlantsGene:VIT_10s0003g01230	EnsemblPlants:VIT_10s0003g01230.t01
unigene:Vvi.997	RefSeq:XP_002266564	RefSeq:XP_002266564.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:2557706..2565530

Molecular Weight (calculated)

40702.8 Da

IEP (calculated)

9.192

GRAVY (calculated)

-0.202

Length

369 amino acids

Sequence
(BLAST)

001: MHGKYEPDHL LVLVHGILAS PSDWTYAEAE LKKRLGRNFL IYVSSSNTYT KTFGGIDGAG KRLADEVTQV VQKTQSLKRI SFLAHSLGGL FARYAIAVLY
101: TPNTSSISQS DDLKNSKKEN SQSSCSSRRG MIAGLEPINF ITLATPHLGV RGKKQLPFLL GVPILEKIAA PIAPIFAGRT GSQLFLTDGK PNKPPLLLRM
201: ASNCEDGKFI AALGAFSCRI LYANVSYDHM VGWRTSSIRR ETELVKPPRR SLDGYKHVVD VEYCPPVLSD GPHFPPEAAK AKEAAQNAPS TQSTVEYHEI
301: LEEEMIHGLQ QLGWKKVDVS FHSAFWPFFA HNNIHVKNEW LYNAGVGVVA HVAESLKQQE SSTFIAANL

Best Arabidopsis Sequence Match ( AT1G29120.1 )
(BLAST)

001: MSTASSWIQQ PPFRYLPDRG GFSKPSSRSA RQFSSGVVSA SASSPSPSSS CSCGYSEILN FDFGSNRSWN QQGRRVQAMS STAQRKFSLS KGDSDDKNEP
101: DHLLVLVHGI LASPSDWLYV EAELKRRLGR RFLIYASSSN TFTKTFGGID GAGKRLAEEV RQVVQKSKSL KKISFLAHSL GGLFSRHAVA VLYSAAMAQV
201: SDVAVSQSGN SNLLRGRIAG LEPINFITLA TPHLGVRGRK QLPFLLGVPI LEKLAAPIAP FFVGRTGSQL FLTDGKADKP PLLLRMASDG EDLKFLSALG
301: AFRSRIIYAN VSYDHMVGWR TSSIRRETEL IKPSRRSLDG YKHVVDVEYC PPVSSDGAHF PPEAAKAKEA AQSSPSPQNT LEYHEIVEEE MIRGLQRLGW
401: KKVDVSFHST FWPYLAHNNI HVKSERLYKA GAGVIAHVAD SIKQQESSTF ITASL

Arabidopsis Description

AT1G29120 protein [Source:UniProtKB/TrEMBL;Acc:C0Z2A9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.