Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90168 | Canola | plastid | 88.16 | 90.34 |
| CDY43318 | Canola | plastid | 88.16 | 90.13 |
| Bra010851.1-P | Field mustard | plastid | 87.94 | 90.11 |
| CDY15650 | Canola | cytosol | 47.81 | 83.85 |
| VIT_10s0003g01230.t01 | Wine grape | cytosol | 63.16 | 78.05 |
| KRH42854 | Soybean | plastid | 67.76 | 68.51 |
| Zm00001d045311_P015 | Maize | golgi, mitochondrion | 43.64 | 66.56 |
| Solyc02g076870.2.1 | Tomato | plastid | 64.25 | 64.68 |
| PGSC0003DMT400026437 | Potato | cytosol | 25.22 | 61.17 |
| KRH58952 | Soybean | plastid | 66.45 | 59.41 |
| TraesCS7B01G008200.1 | Wheat | plastid | 56.14 | 59.4 |
| TraesCS7D01G105700.1 | Wheat | plastid | 56.14 | 59.4 |
| TraesCS7A01G110400.1 | Wheat | plastid | 55.48 | 58.56 |
| KXG19329 | Sorghum | plastid | 56.58 | 58.24 |
| GSMUA_Achr10P... | Banana | cytosol | 53.29 | 57.31 |
| Os06t0154400-01 | Rice | cytosol, nucleus, plastid | 21.49 | 50.78 |
| HORVU7Hr1G023560.21 | Barley | nucleus | 55.04 | 47.9 |
| AT5G51180.1 | Thale cress | cytoskeleton, cytosol, nucleus | 31.58 | 40.34 |
| AT1G10040.1 | Thale cress | nucleus | 33.99 | 37.62 |
| AT4G25770.2 | Thale cress | plastid | 32.89 | 35.55 |
Protein Annotations
| Gene3D:3.40.50.1820 | MapMan:35.2 | EntrezGene:839787 | UniProt:A0A178W6A8 | InterPro:AB_hydrolase | EMBL:AK318723 |
| ProteinID:ANM58956.1 | ArrayExpress:AT1G29120 | EnsemblPlantsGene:AT1G29120 | RefSeq:AT1G29120 | TAIR:AT1G29120 | RefSeq:AT1G29120-TAIR-G |
| EnsemblPlants:AT1G29120.8 | Unigene:At.40802 | UniProt:C0Z2A9 | InterPro:DUF676_lipase-like | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016787 | InterPro:IPR029058 | RefSeq:NP_001321355.1 | ProteinID:OAP13015.1 | PFAM:PF05057 | PANTHER:PTHR12482 |
| PANTHER:PTHR12482:SF11 | SUPFAM:SSF53474 | UniParc:UPI00019B266B | SEG:seg | : | : |
Description
AT1G29120 protein [Source:UniProtKB/TrEMBL;Acc:C0Z2A9]
Coordinates
chr1:+:10174209..10178508
Molecular Weight (calculated)
50051.5 Da
IEP (calculated)
10.152
GRAVY (calculated)
-0.280
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTASSWIQQ PPFRYLPDRG GFSKPSSRSA RQFSSGVVSA SASSPSPSSS CSCGYSEILN FDFEGSNRSW NQQGRRVQAM SSTAQRKFSL SKGDSDDKNE
101: PDHLLVLVHG ILASPSDWLY VEAELKRRLG RRFLIYASSS NTFTKTFGGI DGAGKRLAEE VRQVVQKSKS LKKISFLAHS LGGLFSRHAV AVLYSAAMAQ
201: VSDVAVSQSG NSNLLRGRIA GLEPINFITL ATPHLGVRGR KQLPFLLGVP ILEKLAAPIA PFFVGRTGSQ LFLTDGKADK PPLLLRMASD GEDLKFLSAL
301: GAFRSRIIYA NVSYDHMVGW RTSSIRRETE LIKPSRRSLD GYKHVVDVEY CPPVSSDGAH FPPEAAKAKE AAQSSPSPQN TLEYHEIVEE EMIRGLQRLG
401: WKKVDVSFHS TFWPYLAHNN IHVKSERLYK AGAGVIAHVA DSIKQQESST FITASL
101: PDHLLVLVHG ILASPSDWLY VEAELKRRLG RRFLIYASSS NTFTKTFGGI DGAGKRLAEE VRQVVQKSKS LKKISFLAHS LGGLFSRHAV AVLYSAAMAQ
201: VSDVAVSQSG NSNLLRGRIA GLEPINFITL ATPHLGVRGR KQLPFLLGVP ILEKLAAPIA PFFVGRTGSQ LFLTDGKADK PPLLLRMASD GEDLKFLSAL
301: GAFRSRIIYA NVSYDHMVGW RTSSIRRETE LIKPSRRSLD GYKHVVDVEY CPPVSSDGAH FPPEAAKAKE AAQSSPSPQN TLEYHEIVEE EMIRGLQRLG
401: WKKVDVSFHS TFWPYLAHNN IHVKSERLYK AGAGVIAHVA DSIKQQESST FITASL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.