Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31052 | Canola | nucleus | 77.67 | 85.56 |
| CDY20663 | Canola | nucleus | 78.64 | 84.82 |
| Bra018465.1-P | Field mustard | nucleus | 73.79 | 81.94 |
| KRH62120 | Soybean | nucleus | 57.77 | 57.49 |
| VIT_18s0001g08360.t01 | Wine grape | nucleus | 56.8 | 57.35 |
| KRH52824 | Soybean | nucleus | 57.28 | 57.0 |
| Solyc04g077180.1.1 | Tomato | nucleus | 49.51 | 52.31 |
| Os03t0726800-01 | Rice | cytosol | 47.09 | 50.39 |
| KXG37661 | Sorghum | nucleus | 47.09 | 50.26 |
| PGSC0003DMT400012617 | Potato | nucleus | 51.7 | 49.65 |
| TraesCS4B01G057600.2 | Wheat | cytosol, mitochondrion | 46.12 | 49.61 |
| AT5G51180.1 | Thale cress | cytoskeleton, cytosol, nucleus | 42.72 | 49.3 |
| TraesCS4D01G057800.2 | Wheat | mitochondrion | 46.36 | 48.97 |
| TraesCS4A01G256900.1 | Wheat | nucleus | 46.12 | 48.59 |
| GSMUA_Achr3P30660_001 | Banana | nucleus | 49.76 | 46.49 |
| HORVU4Hr1G009670.6 | Barley | cytosol | 45.87 | 45.87 |
| AT4G25770.2 | Thale cress | plastid | 44.42 | 43.36 |
| TraesCS5D01G148300.1 | Wheat | mitochondrion | 13.59 | 35.22 |
| AT1G29120.8 | Thale cress | plastid | 37.62 | 33.99 |
Protein Annotations
| Gene3D:3.40.50.1820 | MapMan:35.2 | EntrezGene:837539 | UniProt:A0A178WAE8 | InterPro:AB_hydrolase | ProteinID:AEE28531.1 |
| ArrayExpress:AT1G10040 | EnsemblPlantsGene:AT1G10040 | RefSeq:AT1G10040 | TAIR:AT1G10040 | RefSeq:AT1G10040-TAIR-G | EnsemblPlants:AT1G10040.1 |
| TAIR:AT1G10040.1 | Unigene:At.18966 | EMBL:BT029010 | InterPro:DUF676_lipase-like | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0044255 |
| GO:GO:0052689 | InterPro:IPR029058 | RefSeq:NP_172475.3 | ProteinID:OAP15397.1 | PFAM:PF05057 | PO:PO:0000293 |
| PANTHER:PTHR12482 | PANTHER:PTHR12482:SF21 | UniProt:Q08A69 | SUPFAM:SSF53474 | UniParc:UPI000034F4F8 | SEG:seg |
Description
Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q08A69]
Coordinates
chr1:-:3275891..3278779
Molecular Weight (calculated)
46796.0 Da
IEP (calculated)
9.503
GRAVY (calculated)
-0.688
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEDSVIPK NTEGDGRVGS DLEGIRKPKK MKKMRSRKSD DKETKKKKKK YWMGCLRAES DESGNVDLTV DFPGERTEPT HLVVMVNGLI GSAQNWRFAA
101: KQMLKKYPQD LLVHCSKRNH STQTFDGVDV MGERLAEEVR SVIKRHPSLQ KISFVGHSLG GLIARYAIGR LYEQESREEL PHNSDDIGDK CSIEEPKARI
201: AGLEPVYFIT SATPHLGSRG HKQVPLFSGS YTLERLATRM SGCLGKTGKH LFLADSDGGK PPLLLRMVKD SRDLKFISAL QCFKRRIAYA NTSFDHLVGW
301: STSSIRRHNE LPKLQRGPVN EKYPHIVNVE APDTASNYEE DHSRTKADRF KNLDMEEEMI RELTKLSWER VDVSFRGTLQ RFLAHNTIQV KTKMINSAGA
401: DVIQHMIDNF EP
101: KQMLKKYPQD LLVHCSKRNH STQTFDGVDV MGERLAEEVR SVIKRHPSLQ KISFVGHSLG GLIARYAIGR LYEQESREEL PHNSDDIGDK CSIEEPKARI
201: AGLEPVYFIT SATPHLGSRG HKQVPLFSGS YTLERLATRM SGCLGKTGKH LFLADSDGGK PPLLLRMVKD SRDLKFISAL QCFKRRIAYA NTSFDHLVGW
301: STSSIRRHNE LPKLQRGPVN EKYPHIVNVE APDTASNYEE DHSRTKADRF KNLDMEEEMI RELTKLSWER VDVSFRGTLQ RFLAHNTIQV KTKMINSAGA
401: DVIQHMIDNF EP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.