Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400065786 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51180.1 | PGSC0003DMT400065786 | AT1G14340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g052020.2.1 | Tomato | cytosol | 95.33 | 95.33 |
| PGSC0003DMT400027928 | Potato | nucleus | 76.92 | 77.78 |
| VIT_16s0013g01410.t01 | Wine grape | cytosol | 68.13 | 71.26 |
| KRG90131 | Soybean | cytosol | 67.86 | 69.38 |
| KRH33381 | Soybean | cytosol | 67.03 | 68.35 |
| CDY05841 | Canola | cytosol | 62.91 | 67.55 |
| Bra035731.1-P | Field mustard | cytosol | 62.91 | 66.96 |
| GSMUA_Achr7P06920_001 | Banana | cytosol | 59.34 | 66.87 |
| CDX71694 | Canola | cytosol | 64.56 | 66.57 |
| GSMUA_Achr5P15490_001 | Banana | cytosol | 58.52 | 66.15 |
| AT5G51180.1 | Thale cress | cytoskeleton, cytosol, nucleus | 64.84 | 66.11 |
| GSMUA_Achr4P28970_001 | Banana | cytosol | 64.29 | 65.73 |
| EES05791 | Sorghum | cytosol | 61.26 | 64.64 |
| GSMUA_Achr2P12000_001 | Banana | cytosol | 60.71 | 64.24 |
| Zm00001d017470_P001 | Maize | cytosol | 61.54 | 62.92 |
| TraesCS7D01G302900.1 | Wheat | cytoskeleton, cytosol, nucleus | 59.62 | 61.65 |
| TraesCS6D01G226000.1 | Wheat | cytosol | 59.62 | 61.65 |
| TraesCS6A01G243800.1 | Wheat | cytosol | 59.07 | 61.43 |
| HORVU6Hr1G062800.5 | Barley | cytosol | 60.16 | 61.34 |
| TraesCS7A01G306200.1 | Wheat | cytosol | 59.34 | 61.19 |
| TraesCS6B01G280500.1 | Wheat | cytoskeleton, cytosol, nucleus | 59.34 | 61.02 |
| TraesCS7B01G206400.1 | Wheat | cytosol | 59.07 | 60.91 |
| OQU79861 | Sorghum | cytosol | 58.79 | 60.45 |
| Os08t0143700-01 | Rice | cytoskeleton, cytosol, nucleus | 57.42 | 59.71 |
| Zm00001d024645_P001 | Maize | cytosol | 57.42 | 54.29 |
| PGSC0003DMT400070685 | Potato | cytosol | 8.79 | 52.46 |
| HORVU7Hr1G072940.6 | Barley | plastid | 55.22 | 50.38 |
| Os02t0655600-01 | Rice | cytosol | 17.31 | 45.65 |
| PGSC0003DMT400012617 | Potato | nucleus | 46.15 | 39.16 |
| PGSC0003DMT400026437 | Potato | cytosol | 18.68 | 36.17 |
| PGSC0003DMT400026438 | Potato | cytosol | 16.76 | 35.06 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069125 | EnsemblPlantsGene:PGSC0003DMG400026888 | EntrezGene:102598167 | Gene3D:3.40.50.1820 | InterPro:AB_hydrolase | InterPro:DUF676_lipase-like |
| InterPro:IPR029058 | ncoils:Coil | PANTHER:PTHR12482 | PANTHER:PTHR12482:SF14 | PFAM:PF05057 | PGSC:PGSC0003DMG400026888 |
| RefSeq:XP_006367902.1 | RefSeq:XP_006367903.1 | SUPFAM:SSF53474 | UniParc:UPI0002961B7B | UniProt:M1CJZ0 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026888]
Coordinates
chr00:-:31547255..31556058
Molecular Weight (calculated)
40651.5 Da
IEP (calculated)
6.874
GRAVY (calculated)
-0.309
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGQVVNGR GGVCSSETVN GGEDVFSCEK SDASSADHLV IMVHGILGST ADWKFGAEQF IRRFPDKVFV HCSERNIGKL TLDGVDVMGE RLSEEVLEVI
101: KRKPGLKKIS FVSHSVGGLV ARYAIGRLYR PPRIENTEDL SANACAEGLK GCTIAGLEPV NFVTVATPHL GSRGNKQVPF LFGVTALEKA AFHVIHLIFK
201: RTGRHLFLCD NDVGRPPLLK RMVEDDGELQ FLSALRSFKR RVAYSNVGYD HVVGWRTSSI RRNNELPKWE DSCNEKYPHI VYEEHCKACE GEQGESVLKE
301: DDSLDKLEEN LVTGLSRVSW DKVDVSFHRS RRRFAAHTVI QVKDQKIDAE GADVIQHMID NFIV
101: KRKPGLKKIS FVSHSVGGLV ARYAIGRLYR PPRIENTEDL SANACAEGLK GCTIAGLEPV NFVTVATPHL GSRGNKQVPF LFGVTALEKA AFHVIHLIFK
201: RTGRHLFLCD NDVGRPPLLK RMVEDDGELQ FLSALRSFKR RVAYSNVGYD HVVGWRTSSI RRNNELPKWE DSCNEKYPHI VYEEHCKACE GEQGESVLKE
301: DDSLDKLEEN LVTGLSRVSW DKVDVSFHRS RRRFAAHTVI QVKDQKIDAE GADVIQHMID NFIV
001: MEKHEEENGL CKAESVDGSL DVWSCQNSDS SSADHLVVMV HGILGSTDDW KFGAEQFVKK MPDKVFVHCS EKNVSALTLD GVDVMGERLA AEVLDIIQRK
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
Arabidopsis Description
AT5G51180 protein [Source:UniProtKB/TrEMBL;Acc:Q949V0]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.