Factsheet for TraesCS6B01G280500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
cytoskeleton 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51180.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT5G51180.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT5G51180.1	TraesCS2D01G523400.1	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G243800.1	Wheat	cytosol	96.05	97.14
TraesCS6D01G226000.1	Wheat	cytosol	96.33	96.88
HORVU6Hr1G062800.5	Barley	cytosol	93.79	93.0
EES05791	Sorghum	cytosol	78.25	80.29
Zm00001d017470_P001	Maize	cytosol	79.94	79.49
GSMUA_Achr5P15490_001	Banana	cytosol	61.3	67.39
CDY05841	Canola	cytosol	58.19	60.77
Bra035731.1-P	Field mustard	cytosol	58.19	60.23
PGSC0003DMT400069125	Potato	cytosol	61.02	59.34
Solyc03g093510.2.1	Tomato	nucleus	60.45	59.28
CDX71694	Canola	cytosol	59.04	59.21
PGSC0003DMT400027928	Potato	nucleus	59.89	58.89
KRG90131	Soybean	cytosol	59.04	58.71
VIT_16s0013g01410.t01	Wine grape	cytosol	57.63	58.62
TraesCS7B01G206400.1	Wheat	cytosol	58.19	58.36
KRH33381	Soybean	cytosol	58.76	58.26
Solyc05g052020.2.1	Tomato	cytosol	59.89	58.24
AT5G51180.1	Thale cress	cytoskeleton, cytosol, nucleus	58.47	57.98
Os02t0655600-01	Rice	cytosol	21.19	54.35
TraesCS4B01G057600.2	Wheat	cytosol, mitochondrion	45.2	41.78
TraesCS7B01G177600.2	Wheat	plastid	47.74	39.12
TraesCS6B01G379700.1	Wheat	plastid	48.31	37.5
TraesCS7B01G008200.1	Wheat	plastid	42.37	34.8

Protein Annotations

EnsemblPlants:TraesCS6B01G280500.1	EnsemblPlantsGene:TraesCS6B01G280500	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:DUF676_lipase-like	InterPro:IPR029058
PANTHER:PTHR12482	PANTHER:PTHR12482:SF37	PFAM:PF05057	SEG:seg	SUPFAM:SSF53474	MapMan:35.2

Description

No Description!

Coordinates

chr6B:+:506701873..506706677

Molecular Weight (calculated)

39112.7 Da

IEP (calculated)

6.654

GRAVY (calculated)

-0.201

Length

354 amino acids

Sequence
(BLAST)

001: MGDLAGGDCR EAAAPEEEAA APAPAVGGAD HLVIMVHGII GSTADWKYGA EQFHKLLEGR VIVHCSNSNM HKLTLDGIDV MGERLAQEVI EEINKRPQIT
101: KISFVAHSVG GLVARYAIGR LYRPPGQSLE NSPQSLRDSN RGNIHGLDAV NFITVASPHL GSRGNKQVPF LFGVTAIEKF ACCIIHFIFR RTGKHLFLTD
201: NDDGKPPLLQ LMVDDCEDLR FISALQAFQR RVAYSNVGYD HIVGWRTSSI RGASELPKWV DSTSKIYPHI VYEELSKAET LDQCADVADI DKDNCTLEER
301: LLRGLKRVSW EKVDVSFHNS KARSAAHSVI QVKDPVMHSE GADVIKHMID HFVT

Best Arabidopsis Sequence Match ( AT5G51180.1 )
(BLAST)

001: MEKHEEENGL CKAESVDGSL DVWSCQNSDS SSADHLVVMV HGILGSTDDW KFGAEQFVKK MPDKVFVHCS EKNVSALTLD GVDVMGERLA AEVLDIIQRK
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA

Arabidopsis Description

AT5G51180 protein [Source:UniProtKB/TrEMBL;Acc:Q949V0]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.