Factsheet for TraesCS6D01G226000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51180.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT5G51180.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT5G51180.1	TraesCS2D01G523400.1	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G280500.1	Wheat	cytoskeleton, cytosol, nucleus	96.88	96.33
TraesCS6A01G243800.1	Wheat	cytosol	95.74	96.29
HORVU6Hr1G062800.5	Barley	cytosol	93.47	92.16
EES05791	Sorghum	cytosol	79.55	81.16
Zm00001d017470_P001	Maize	cytosol	80.68	79.78
GSMUA_Achr5P15490_001	Banana	cytosol	62.22	68.01
CDY05841	Canola	cytosol	59.09	61.36
Bra035731.1-P	Field mustard	cytosol	59.09	60.82
CDX71694	Canola	cytosol	60.23	60.06
TraesCS7D01G302900.1	Wheat	cytoskeleton, cytosol, nucleus	59.94	59.94
Solyc03g093510.2.1	Tomato	nucleus	61.36	59.83
PGSC0003DMT400069125	Potato	cytosol	61.65	59.62
KRG90131	Soybean	cytosol	60.23	59.55
VIT_16s0013g01410.t01	Wine grape	cytosol	58.81	59.48
PGSC0003DMT400027928	Potato	nucleus	60.8	59.44
KRH33381	Soybean	cytosol	59.94	59.1
AT5G51180.1	Thale cress	cytoskeleton, cytosol, nucleus	59.38	58.54
Solyc05g052020.2.1	Tomato	cytosol	60.51	58.52
Os02t0655600-01	Rice	cytosol	22.16	56.52
TraesCS4D01G057800.2	Wheat	mitochondrion	45.74	41.28
TraesCS7D01G281400.3	Wheat	plastid	48.3	39.35
TraesCS6D01G329100.1	Wheat	plastid	49.15	37.94
TraesCS5D01G148300.1	Wheat	mitochondrion	16.76	37.11
TraesCS7D01G105700.1	Wheat	plastid	42.9	35.03

Protein Annotations

EnsemblPlants:TraesCS6D01G226000.1	EnsemblPlantsGene:TraesCS6D01G226000	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:DUF676_lipase-like	InterPro:IPR029058
PANTHER:PTHR12482	PANTHER:PTHR12482:SF37	PFAM:PF05057	SEG:seg	SUPFAM:SSF53474	MapMan:35.2

Description

No Description!

Coordinates

chr6D:-:317489308..317492787

Molecular Weight (calculated)

38909.4 Da

IEP (calculated)

6.756

GRAVY (calculated)

-0.237

Length

352 amino acids

Sequence
(BLAST)

001: MGDPGGGDCR EAAAAEEEAP APAVGGADHL VVMVHGIVGS TADWKYGAEQ FHKFLQDRVI VHCSNSNMHK LTLDGIDVMG ERLAQEVIEE INKRPQITKI
101: SFVAHSVGGL VARYAIGRLY RPPGQSLENS PQSLRDSNRG NIHGLDAVNF ITVASPHLGS RGNKQVPFLF GVTAIEKFAC CIIHFIFRRT GKHLFLTDND
201: DGKPPLLQLM VDDCGDLRFI SALQAFQRRV AYSNVGYDHI VGWRTSSIRG ASELPKWVDS TSKVYPHIVY EELSKAETLD QCADVADMDK DNCTLEERLL
301: RGLKRVSWEK VDVSFHNSKA RSAAHSVIQV KDPVMHSEGA DVIKHMIDHF VT

Best Arabidopsis Sequence Match ( AT5G51180.1 )
(BLAST)

001: MEKHEEENGL CKAESVDGSL DVWSCQNSDS SSADHLVVMV HGILGSTDDW KFGAEQFVKK MPDKVFVHCS EKNVSALTLD GVDVMGERLA AEVLDIIQRK
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA

Arabidopsis Description

AT5G51180 protein [Source:UniProtKB/TrEMBL;Acc:Q949V0]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.