Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400065786 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51180.1 | PGSC0003DMT400065786 | AT1G14340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g093510.2.1 | Tomato | nucleus | 97.5 | 97.23 |
| PGSC0003DMT400069125 | Potato | cytosol | 77.78 | 76.92 |
| CDY05841 | Canola | cytosol | 66.11 | 70.21 |
| Bra035731.1-P | Field mustard | cytosol | 66.11 | 69.59 |
| CDX71694 | Canola | cytosol | 67.78 | 69.12 |
| VIT_16s0013g01410.t01 | Wine grape | cytosol | 66.67 | 68.97 |
| GSMUA_Achr5P15490_001 | Banana | cytosol | 60.56 | 67.7 |
| AT5G51180.1 | Thale cress | cytoskeleton, cytosol, nucleus | 66.39 | 66.95 |
| KRG90131 | Soybean | cytosol | 66.11 | 66.85 |
| KRH33381 | Soybean | cytosol | 65.83 | 66.39 |
| GSMUA_Achr7P06920_001 | Banana | cytosol | 59.44 | 66.25 |
| GSMUA_Achr4P28970_001 | Banana | cytosol | 63.33 | 64.04 |
| EES05791 | Sorghum | cytosol | 60.28 | 62.9 |
| GSMUA_Achr2P12000_001 | Banana | cytosol | 59.72 | 62.5 |
| OQU79861 | Sorghum | cytosol | 60.56 | 61.58 |
| Zm00001d017470_P001 | Maize | cytosol | 60.56 | 61.24 |
| TraesCS7D01G302900.1 | Wheat | cytoskeleton, cytosol, nucleus | 59.72 | 61.08 |
| TraesCS6D01G226000.1 | Wheat | cytosol | 59.44 | 60.8 |
| TraesCS7A01G306200.1 | Wheat | cytosol | 59.44 | 60.62 |
| TraesCS7B01G206400.1 | Wheat | cytosol | 59.17 | 60.34 |
| TraesCS6A01G243800.1 | Wheat | cytosol | 58.33 | 60.0 |
| TraesCS6B01G280500.1 | Wheat | cytoskeleton, cytosol, nucleus | 58.89 | 59.89 |
| Os08t0143700-01 | Rice | cytoskeleton, cytosol, nucleus | 58.06 | 59.71 |
| HORVU6Hr1G062800.5 | Barley | cytosol | 59.17 | 59.66 |
| PGSC0003DMT400070685 | Potato | cytosol | 9.72 | 57.38 |
| Zm00001d024645_P001 | Maize | cytosol | 59.17 | 55.32 |
| HORVU7Hr1G072940.6 | Barley | plastid | 55.28 | 49.87 |
| Os02t0655600-01 | Rice | cytosol | 17.22 | 44.93 |
| PGSC0003DMT400012617 | Potato | nucleus | 47.78 | 40.09 |
| PGSC0003DMT400026437 | Potato | cytosol | 18.61 | 35.64 |
| PGSC0003DMT400026438 | Potato | cytosol | 16.67 | 34.48 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400027928 | EnsemblPlantsGene:PGSC0003DMG400010748 | EntrezGene:102586417 | Gene3D:3.40.50.1820 | InterPro:AB_hydrolase | InterPro:DUF676_lipase-like |
| InterPro:IPR029058 | PANTHER:PTHR12482 | PANTHER:PTHR12482:SF14 | PFAM:PF05057 | PGSC:PGSC0003DMG400010748 | RefSeq:XP_006358223.1 |
| SUPFAM:SSF53474 | UniParc:UPI000294E860 | UniProt:M1AQD7 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010748]
Coordinates
chr3:-:38176645..38185895
Molecular Weight (calculated)
40099.5 Da
IEP (calculated)
6.997
GRAVY (calculated)
-0.376
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGKVHNGG VSSSETFNGG EDVFSSKPSD ASTADHLVMM VHGILGSASD WKFGAEQFVR NLPDKVFVHC SERNMAKLSL DGVDVMGERL AEEVLDVVKR
101: RPGLKKISFV AHSVGGVVAR YAIGKLYRPP RTDNVQKFSD DTSEEGSKGT IVGLAPINFI TVASPHLGSR GNKQVPFLFG VTAFEKAAGL CVHWIFKKTG
201: RHLFLNEDEG KPPLLRRMVE DDGELRFMSA LSSFKRRVAY SNVGYDHIVG WGTSSIRRNN ELPKWEDSLN KKYPHIVYQE HCKACDGEQG ESVVKEGDHF
301: DKLEEELVTG LSRVSWEKID VSFHSSRNRF AAHSVIQVKD HYMHAEGADV VQHIIDNFLL
101: RPGLKKISFV AHSVGGVVAR YAIGKLYRPP RTDNVQKFSD DTSEEGSKGT IVGLAPINFI TVASPHLGSR GNKQVPFLFG VTAFEKAAGL CVHWIFKKTG
201: RHLFLNEDEG KPPLLRRMVE DDGELRFMSA LSSFKRRVAY SNVGYDHIVG WGTSSIRRNN ELPKWEDSLN KKYPHIVYQE HCKACDGEQG ESVVKEGDHF
301: DKLEEELVTG LSRVSWEKID VSFHSSRNRF AAHSVIQVKD HYMHAEGADV VQHIIDNFLL
001: MEKHEEENGL CKAESVDGSL DVWSCQNSDS SSADHLVVMV HGILGSTDDW KFGAEQFVKK MPDKVFVHCS EKNVSALTLD GVDVMGERLA AEVLDIIQRK
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
Arabidopsis Description
AT5G51180 protein [Source:UniProtKB/TrEMBL;Acc:Q949V0]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.