Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g007200.2.1 | Tomato | mitochondrion | 96.33 | 77.38 |
| VIT_01s0026g01970.t01 | Wine grape | cytosol, nucleus, plastid | 67.76 | 67.48 |
| CDX96860 | Canola | nucleus | 61.63 | 61.89 |
| CDY62016 | Canola | nucleus | 57.96 | 60.68 |
| Bra016705.1-P | Field mustard | nucleus | 60.41 | 60.66 |
| Bra019660.1-P | Field mustard | cytosol | 60.41 | 60.66 |
| CDY49093 | Canola | cytosol | 60.0 | 60.0 |
| CDX84035 | Canola | nucleus | 59.59 | 59.84 |
| AT1G14340.1 | Thale cress | nucleus | 59.59 | 59.84 |
| GSMUA_Achr3P19960_001 | Banana | cytosol | 58.37 | 59.09 |
| PGSC0003DMT400017749 | Potato | cytosol | 56.73 | 54.51 |
| KRH69305 | Soybean | nucleus | 61.63 | 51.89 |
| Zm00001d026425_P003 | Maize | cytosol | 51.43 | 51.64 |
| TraesCS2D01G523400.1 | Wheat | nucleus | 51.43 | 51.64 |
| TraesCS2B01G551100.1 | Wheat | nucleus | 51.43 | 51.64 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 51.02 | 51.23 |
| HORVU2Hr1G115210.1 | Barley | cytosol, nucleus, plastid | 51.43 | 50.2 |
| EES12950 | Sorghum | cytosol, nucleus, plastid | 49.8 | 50.0 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 49.39 | 48.59 |
| Os04t0641400-02 | Rice | plastid | 53.88 | 45.99 |
| PGSC0003DMT400018578 | Potato | cytosol | 40.0 | 35.64 |
| PGSC0003DMT400038377 | Potato | cytosol | 38.78 | 33.81 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 36.73 | 32.37 |
| PGSC0003DMT400069547 | Potato | nucleus | 34.29 | 24.71 |
Protein Annotations
| EntrezGene:102591864 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AFX67041 | ProteinID:AFX67041.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | EMBL:JX839759 |
| UniProt:K7WP07 | RefSeq:NP_001275106.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400025609 | PGSC:PGSC0003DMG400025609 |
| EnsemblPlants:PGSC0003DMT400065786 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF7 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002963D48 | InterPro:Vip1-like_RRM_plant | RefSeq:XP_006363239.1 | SEG:seg |
Description
RNA recognition motif containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025609]
Coordinates
chr5:+:5679823..5684334
Molecular Weight (calculated)
26048.2 Da
IEP (calculated)
6.080
GRAVY (calculated)
-0.163
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPGGYTAEV TGLSPTATEK DVQEFFGFCG AIEHVEIVRA GEHASTAYVT FRNPHALETA VLLSGAAILD QRVCITSWGH YQDEFDYWNH SSWKPQEDCY
101: SSQDSQGHYF VSSAGEAVTL TQDVVKTMLS QGYVLGKGAL GKAKAFDESH GLSATAVSKV ADLSERIGLT DKFCAGVEVA RSVDQRYHIS DTTRSAVSAT
201: GRTAISAATA VVNSSYFSKG ALWMSGALSK AAQAAADLGS RGINK
101: SSQDSQGHYF VSSAGEAVTL TQDVVKTMLS QGYVLGKGAL GKAKAFDESH GLSATAVSKV ADLSERIGLT DKFCAGVEVA RSVDQRYHIS DTTRSAVSAT
201: GRTAISAATA VVNSSYFSKG ALWMSGALSK AAQAAADLGS RGINK
001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.