Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400018924 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08480.1 | PGSC0003DMT400018924 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g073900.2.1 | Tomato | nucleus | 98.65 | 98.65 |
| PGSC0003DMT400007733 | Potato | cytosol | 89.19 | 88.59 |
| CDX95057 | Canola | cytosol | 64.86 | 69.57 |
| VIT_07s0005g04750.t01 | Wine grape | cytosol | 68.24 | 69.18 |
| CDX93559 | Canola | cytosol | 64.19 | 68.84 |
| AT1G08480.1 | Thale cress | cytosol | 64.86 | 67.61 |
| Bra018622.1-P | Field mustard | cytosol | 62.84 | 67.39 |
| CDY31141 | Canola | cytosol | 63.51 | 66.67 |
| Bra030729.1-P | Field mustard | cytosol | 62.84 | 66.43 |
| CDX97492 | Canola | cytosol | 62.16 | 65.25 |
| KRG89352 | Soybean | cytosol | 60.14 | 63.12 |
| GSMUA_Achr10P... | Banana | cytosol | 43.24 | 45.71 |
| GSMUA_Achr6P18420_001 | Banana | cytosol | 41.89 | 43.36 |
| TraesCS7A01G319300.1 | Wheat | cytosol | 40.54 | 42.55 |
| TraesCS7B01G220100.1 | Wheat | golgi | 40.54 | 42.55 |
| TraesCS7D01G315800.1 | Wheat | cytosol | 40.54 | 42.55 |
| Os08t0112800-01 | Rice | mitochondrion | 39.19 | 40.85 |
| HORVU7Hr1G076300.3 | Barley | cytosol | 40.54 | 38.71 |
| Zm00001d049691_P002 | Maize | cytosol, mitochondrion | 39.86 | 38.06 |
| KXG24249 | Sorghum | cytosol | 38.51 | 37.5 |
| Zm00001d035054_P002 | Maize | cytosol, mitochondrion, peroxisome | 39.19 | 34.94 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400015105 | EnsemblPlantsGene:PGSC0003DMG400005906 | EntrezGene:102582349 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005749 | GO:GO:0016020 | InterPro:SDH6 | PANTHER:PTHR36708 |
| PGSC:PGSC0003DMG400005906 | RefSeq:XP_006361112.1 | UniParc:UPI000295C2F1 | UniProt:M1A5G6 | MapMan:2.3.6.1.6 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005906]
Coordinates
chr6:-:54477106..54481024
Molecular Weight (calculated)
16768.6 Da
IEP (calculated)
6.973
GRAVY (calculated)
-0.401
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDSSSSQS FLRRHWEGYK EFWGERFSFL DNYSRFIKRD KPLPSWSDSD VEEFIASDPL HGPTLRTARE AAKISAVGGI IGAVSTAGVT WKYSRSLHGT
101: ALSLGAGAVF GWTFGQEVAN HWLQLYRLDT MAAQVKFMEW WQNKVEGQ
101: ALSLGAGAVF GWTFGQEVAN HWLQLYRLDT MAAQVKFMEW WQNKVEGQ
001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
Arabidopsis Description
SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.