Factsheet for TraesCS7B01G220100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08480.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT1G08480.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT1G08480.1	TraesCSU01G065800.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G315800.1	Wheat	cytosol	100.0	100.0
TraesCS7A01G319300.1	Wheat	cytosol	100.0	100.0
HORVU7Hr1G076300.3	Barley	cytosol	97.16	88.39
Os08t0112800-01	Rice	mitochondrion	82.98	82.39
Zm00001d049691_P002	Maize	cytosol, mitochondrion	90.07	81.94
KXG24249	Sorghum	cytosol	85.11	78.95
Zm00001d035054_P002	Maize	cytosol, mitochondrion, peroxisome	88.65	75.3
GSMUA_Achr10P...	Banana	cytosol	71.63	72.14
GSMUA_Achr6P18420_001	Banana	cytosol	71.63	70.63
VIT_07s0005g04750.t01	Wine grape	cytosol	45.39	43.84
PGSC0003DMT400007733	Potato	cytosol	43.97	41.61
Solyc11g071790.1.1	Tomato	cytosol	43.97	41.61
Bra030729.1-P	Field mustard	cytosol	41.13	41.43
CDY31141	Canola	cytosol	41.13	41.13
Bra018622.1-P	Field mustard	cytosol	39.72	40.58
PGSC0003DMT400015105	Potato	nucleus	42.55	40.54
Solyc06g073900.2.1	Tomato	nucleus	41.84	39.86
CDX95057	Canola	cytosol	39.01	39.86
CDX93559	Canola	cytosol	39.01	39.86
CDX97492	Canola	cytosol	39.72	39.72
KRG89352	Soybean	cytosol	39.72	39.72
AT1G08480.1	Thale cress	cytosol	39.72	39.44

Protein Annotations

EnsemblPlants:TraesCS7B01G220100.1	EnsemblPlantsGene:TraesCS7B01G220100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005749	GO:GO:0005773
GO:GO:0005774	GO:GO:0009536	GO:GO:0016020	GO:GO:0043495	GO:GO:0045273	InterPro:SDH6
PANTHER:PTHR36708	SEG:seg	MapMan:2.3.6.1.6	:	:	:

Description

No Description!

Coordinates

chr7B:+:411490873..411492771

Molecular Weight (calculated)

15727.6 Da

IEP (calculated)

8.774

GRAVY (calculated)

-0.325

Length

141 amino acids

Sequence
(BLAST)

001: MGIGEHFEGV KQHWARNFAF LDYFKKVYGR DQPLPKWSDA DVEEFIASDP VYGPQLKALR ESRKFALGGA LAGAAHLGGV AFKYSKSPHG VVLATGFGAL
101: TGAVLGSEVA EHWYELYKMD KQGANLRFIY WWEDKVSGQK N

Best Arabidopsis Sequence Match ( AT1G08480.1 )
(BLAST)

001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ

Arabidopsis Description

SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.