Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97492 | Canola | cytosol | 97.87 | 97.87 |
| Bra030729.1-P | Field mustard | cytosol | 97.16 | 97.86 |
| CDX93559 | Canola | cytosol | 87.23 | 89.13 |
| CDX95057 | Canola | cytosol | 86.52 | 88.41 |
| AT1G08480.1 | Thale cress | cytosol | 81.56 | 80.99 |
| KRG89352 | Soybean | cytosol | 64.54 | 64.54 |
| PGSC0003DMT400007733 | Potato | cytosol | 67.38 | 63.76 |
| Solyc11g071790.1.1 | Tomato | cytosol | 67.38 | 63.76 |
| PGSC0003DMT400015105 | Potato | nucleus | 66.67 | 63.51 |
| Solyc06g073900.2.1 | Tomato | nucleus | 65.96 | 62.84 |
| VIT_07s0005g04750.t01 | Wine grape | cytosol | 63.83 | 61.64 |
| GSMUA_Achr10P... | Banana | cytosol | 42.55 | 42.86 |
| TraesCS7D01G315800.1 | Wheat | cytosol | 41.13 | 41.13 |
| TraesCS7B01G220100.1 | Wheat | golgi | 41.13 | 41.13 |
| TraesCS7A01G319300.1 | Wheat | cytosol | 41.13 | 41.13 |
| Os08t0112800-01 | Rice | mitochondrion | 40.43 | 40.14 |
| GSMUA_Achr6P18420_001 | Banana | cytosol | 39.72 | 39.16 |
| HORVU7Hr1G076300.3 | Barley | cytosol | 41.13 | 37.42 |
| Zm00001d049691_P002 | Maize | cytosol, mitochondrion | 41.13 | 37.42 |
| KXG24249 | Sorghum | cytosol | 39.01 | 36.18 |
| Zm00001d035054_P002 | Maize | cytosol, mitochondrion, peroxisome | 39.72 | 33.73 |
Protein Annotations
| EnsemblPlants:CDY31141 | EnsemblPlantsGene:GSBRNA2T00047229001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005749 | GO:GO:0016020 | InterPro:SDH6 | PANTHER:PTHR36708 | ProteinID:CDY31141 |
| ProteinID:CDY31141.1 | SEG:seg | UniParc:UPI0004EE9509 | UniProt:A0A078H060 | MapMan:2.3.6.1.6 | : |
Description
BnaA08g26910DBnaA08g26910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H060]
Coordinates
chrLK032267:-:403757..405301
Molecular Weight (calculated)
15501.1 Da
IEP (calculated)
7.684
GRAVY (calculated)
-0.316
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSRSLLDG FKGFWEERLS FLDNYTRFTK RDAPLPSWSS SDVDEFIASD PVNGPTLKTA REAAAFGATG AALGAVSTAA FAWKYSKSPH GAALSFLGGG
101: LFGWTFGQEV ANHTMQLYKL DTMAAQVKFM EWWERKSQGR S
101: LFGWTFGQEV ANHTMQLYKL DTMAAQVKFM EWWERKSQGR S
001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
Arabidopsis Description
SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.