CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89402
CDX89404
CDX94426
CDX94429
CDY49480
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08480.1	CDX89402	AT4G25660.1	21798944
AT1G08480.1	CDX89404	AT4G25660.1	21798944
AT1G08480.1	CDX94426	AT4G25660.1	21798944
AT1G08480.1	CDX94429	AT4G25660.1	21798944
AT1G08480.1	CDY49480	AT4G25660.1	21798944
AT1G08480.1	CDY66007	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93559	Canola	cytosol	91.3	91.3
CDX97492	Canola	cytosol	88.41	86.52
CDY31141	Canola	cytosol	88.41	86.52
AT1G08480.1	Thale cress	cytosol	86.23	83.8
PGSC0003DMT400015105	Potato	nucleus	69.57	64.86
PGSC0003DMT400007733	Potato	cytosol	69.57	64.43
Solyc06g073900.2.1	Tomato	nucleus	68.84	64.19
Solyc11g071790.1.1	Tomato	cytosol	68.84	63.76
KRG89352	Soybean	cytosol	64.49	63.12
VIT_07s0005g04750.t01	Wine grape	cytosol	63.04	59.59
GSMUA_Achr10P...	Banana	cytosol	41.3	40.71
TraesCS7A01G319300.1	Wheat	cytosol	39.86	39.01
TraesCS7B01G220100.1	Wheat	golgi	39.86	39.01
TraesCS7D01G315800.1	Wheat	cytosol	39.86	39.01
Os08t0112800-01	Rice	mitochondrion	39.86	38.73
GSMUA_Achr6P18420_001	Banana	cytosol	38.41	37.06
HORVU7Hr1G076300.3	Barley	cytosol	39.86	35.48
Zm00001d049691_P002	Maize	cytosol, mitochondrion	39.13	34.84
KXG24249	Sorghum	cytosol	36.96	33.55
Zm00001d035054_P002	Maize	cytosol, mitochondrion, peroxisome	37.68	31.33

Protein Annotations

EnsemblPlants:CDX95057	EnsemblPlantsGene:GSBRNA2T00100577001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005749	GO:GO:0016020	InterPro:SDH6	PANTHER:PTHR36708	ProteinID:CDX95057
ProteinID:CDX95057.1	UniParc:UPI0004EE8EE4	MapMan:2.3.6.1.6	:	:	:

Description

BnaC05g06140D

Coordinates

chrLK031886:-:909704..910649

Molecular Weight (calculated)

15269.8 Da

IEP (calculated)

5.642

GRAVY (calculated)

-0.249

Length

138 amino acids

Sequence
(BLAST)

001: MGDSSSFVDG IKGFWEERLS FLENYTRFTK RDTPLPSWSS SDVEEFIASD PLHGPTLKTA REAATFGVTG AALGAVSTAA FAWKYSRSPH GTALSFLGGG
101: VFGWTFGQEV ANHTLQLYKL DTMAAQVTFM EWWERKSQ

Best Arabidopsis Sequence Match ( AT1G08480.1 )
(BLAST)

001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ

Arabidopsis Description

SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.