Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
29575040
|
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d045580_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08480.1 | Zm00001d045580_P001 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G315800.1 | Wheat | cytosol | 81.94 | 90.07 |
| TraesCS7B01G220100.1 | Wheat | golgi | 81.94 | 90.07 |
| TraesCS7A01G319300.1 | Wheat | cytosol | 81.94 | 90.07 |
| KXG24249 | Sorghum | cytosol | 87.1 | 88.82 |
| Os08t0112800-01 | Rice | mitochondrion | 76.13 | 83.1 |
| HORVU7Hr1G076300.3 | Barley | cytosol | 81.94 | 81.94 |
| Zm00001d035054_P002 | Maize | cytosol, mitochondrion, peroxisome | 87.74 | 81.93 |
| GSMUA_Achr10P... | Banana | cytosol | 65.16 | 72.14 |
| GSMUA_Achr6P18420_001 | Banana | cytosol | 64.52 | 69.93 |
| VIT_07s0005g04750.t01 | Wine grape | cytosol | 41.29 | 43.84 |
| Bra030729.1-P | Field mustard | cytosol | 37.42 | 41.43 |
| CDY31141 | Canola | cytosol | 37.42 | 41.13 |
| PGSC0003DMT400007733 | Potato | cytosol | 38.71 | 40.27 |
| Solyc11g071790.1.1 | Tomato | cytosol | 38.71 | 40.27 |
| PGSC0003DMT400015105 | Potato | nucleus | 38.06 | 39.86 |
| CDX93559 | Canola | cytosol | 35.48 | 39.86 |
| Bra018622.1-P | Field mustard | cytosol | 35.48 | 39.86 |
| KRG89352 | Soybean | cytosol | 36.13 | 39.72 |
| CDX97492 | Canola | cytosol | 36.13 | 39.72 |
| Solyc06g073900.2.1 | Tomato | nucleus | 37.42 | 39.19 |
| CDX95057 | Canola | cytosol | 34.84 | 39.13 |
| AT1G08480.1 | Thale cress | cytosol | 35.48 | 38.73 |
Protein Annotations
| EnsemblPlants:Zm00001d049691_P002 | EnsemblPlants:Zm00001d049691_T002 | EnsemblPlantsGene:Zm00001d049691 | EntrezGene:100501513 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005749 | GO:GO:0016020 | InterPro:SDH6 |
| PANTHER:PTHR36708 | ProteinID:AQK51074.1 | SEG:seg | UniParc:UPI0001CA90F8 | UniProt:K7U1N4 | MapMan:2.3.6.1.6 |
Description
Succinate dehydrogenase subunit 6 mitochondrial
Coordinates
chr4:+:40460274..40464430
Molecular Weight (calculated)
17001.2 Da
IEP (calculated)
6.791
GRAVY (calculated)
-0.123
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIGEHFEGV KQHWASNFAF LDYYKKVYGR AEPLPKWSDA DVDEFIASDP VYGPQLKALR ESRKFALAGA FAGAAHLGGV ALKYSKAPHG VVLATGFGAI
101: TGAVLGSEVA EHWYQLYKMD KQGANLRFIY WWEDKVSGPS CPPCHLVLSD DPVPV
101: TGAVLGSEVA EHWYQLYKMD KQGANLRFIY WWEDKVSGPS CPPCHLVLSD DPVPV
001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
Arabidopsis Description
SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.