Factsheet for Os08t0112800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 19924544
plastid: 21433289
mitochondrion: 23027867
plastid: 27992503
plasma membrane: 28056797

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 19924544 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, M316, Crawley, WA, 6009, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0107000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08480.1	Os06t0107000-01	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G315800.1	Wheat	cytosol	82.39	82.98
TraesCS7B01G220100.1	Wheat	golgi	82.39	82.98
TraesCS7A01G319300.1	Wheat	cytosol	82.39	82.98
HORVU7Hr1G076300.3	Barley	cytosol	83.8	76.77
KXG24249	Sorghum	cytosol	81.69	76.32
Zm00001d049691_P002	Maize	cytosol, mitochondrion	83.1	76.13
Zm00001d035054_P002	Maize	cytosol, mitochondrion, peroxisome	83.8	71.69
GSMUA_Achr10P...	Banana	cytosol	69.72	70.71
GSMUA_Achr6P18420_001	Banana	cytosol	69.72	69.23
VIT_07s0005g04750.t01	Wine grape	cytosol	42.25	41.1
Bra030729.1-P	Field mustard	cytosol	40.14	40.71
CDY31141	Canola	cytosol	40.14	40.43
KRG89352	Soybean	cytosol	40.14	40.43
CDX95057	Canola	cytosol	38.73	39.86
PGSC0003DMT400007733	Potato	cytosol	41.55	39.6
Solyc11g071790.1.1	Tomato	cytosol	41.55	39.6
PGSC0003DMT400015105	Potato	nucleus	40.85	39.19
Bra018622.1-P	Field mustard	cytosol	38.03	39.13
CDX97492	Canola	cytosol	38.73	39.01
Solyc06g073900.2.1	Tomato	nucleus	40.14	38.51
CDX93559	Canola	cytosol	37.32	38.41
AT1G08480.1	Thale cress	cytosol	37.32	37.32

Protein Annotations

MapMan:2.3.6.1.6	EntrezGene:4344494	EMBL:AK121176	ProteinID:BAD09512.1	ProteinID:BAF22748.1	ProteinID:BAT03520.1
ProteinID:EAZ41292.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005749	GO:GO:0005773
GO:GO:0005774	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019867	GO:GO:0043495	GO:GO:0045273
InterPro:Gly_zipper_2TM_dom	EnsemblPlantsGene:Os08g0112800	EnsemblPlants:Os08t0112800-01	PFAM:PF05433	PANTHER:PTHR36708	UniProt:Q6ZCC4
InterPro:SDH6	TMHMM:TMhelix	UniParc:UPI000023AE49	RefSeq:XP_015650792.1	SEG:seg	:

Description

SUCCINATE DEHYDROGENASE SUBUNIT 6Rickettsia 17 kDa surface antigen family protein. (Os08t0112800-01)

Coordinates

chr8:-:682645..684136

Molecular Weight (calculated)

15728.8 Da

IEP (calculated)

9.278

GRAVY (calculated)

-0.269

Length

142 amino acids

Sequence
(BLAST)

001: MGIHEHVEGI KAHWAKNFSF LDYFKKVYGR DKPLPKWTDA DVDEFIASDP VYGPQLKAMR ESRKFALGGA LVGGAHLGGI ALKYSKAPHG VVLATGFGAI
101: CGAVVGSEVA EHWYQLYKTD KQGANLRFIY WWEDKVAGNQ KS

Best Arabidopsis Sequence Match ( AT1G08480.1 )
(BLAST)

001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ

Arabidopsis Description

SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.